spacer
spacer

PDBsum entry 9f9v

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 9f9v calculated with MOLE 2.0 PDB id
9f9v
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.98 3.21 25.2 -2.08 -0.30 18.9 84 4 2 4 2 0 1 0  
2 3.20 5.54 37.6 -1.72 -0.38 15.2 80 7 3 5 3 1 2 0  
3 3.22 5.46 45.3 -1.00 -0.34 15.2 76 6 2 2 3 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer