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PDBsum entry 9f12
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Pore analysis for: 9f12 calculated with  MOLE 2.0
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PDB id
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9f12
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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22 pores,
coloured by radius |
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22 pores,
coloured by radius
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22 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.32 |
1.63 |
26.7 |
-1.79 |
-0.49 |
28.1 |
78 |
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3 |
2 |
0 |
1 |
0 |
0 |
0 |
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DT 58 A DT 59 A DT 60 A DT 61 A DT 55 B DG 56 B D
A 57 B DA 58 B
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2 |
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3.34 |
3.34 |
27.5 |
-1.50 |
-0.31 |
20.0 |
81 |
2 |
2 |
0 |
2 |
1 |
0 |
0 |
DT 60 A DT 61 A DA 62 A DA 63 A DA 72 A DA 12 B D
A 57 B DA 58 B DT 66 B DT 67 B
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3 |
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3.25 |
3.33 |
33.9 |
-0.86 |
0.14 |
13.9 |
83 |
3 |
1 |
1 |
1 |
1 |
1 |
0 |
DT 60 A DT 61 A DA 62 A DA 63 A DA 57 B DA 58 B
DT 67 B
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4 |
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1.71 |
1.87 |
41.3 |
-0.31 |
-0.27 |
11.3 |
82 |
3 |
2 |
3 |
3 |
0 |
0 |
0 |
DA 66 A DT 74 A DC 69 B DT 70 B DC 71 B DT 72 B
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5 |
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1.51 |
1.67 |
44.9 |
-1.99 |
-0.65 |
22.8 |
85 |
7 |
1 |
0 |
0 |
0 |
0 |
0 |
DA 39 A DT 40 A DA 41 A DT 42 A DT 35 B DC 36 B
DT 37 B DT 38 B DT 39 B DA 40 B DT 41 B DA 42 B D
A 43 B
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6 |
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1.51 |
1.96 |
46.3 |
-1.28 |
-0.64 |
13.3 |
94 |
4 |
0 |
3 |
1 |
0 |
0 |
0 |
DT 19 A DC 20 A DA 21 A DT 60 A DT 61 A DT 22 B
DT 23 B DT 24 B DT 25 B DA 57 B DA 58 B
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7 |
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2.51 |
2.51 |
47.9 |
-1.33 |
-0.52 |
17.9 |
82 |
2 |
3 |
2 |
3 |
1 |
0 |
0 |
DA 72 A DA 73 A DT 74 A DA 12 B DT 67 B DT 68 B
DT 78 B
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8 |
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1.47 |
1.47 |
56.0 |
-1.11 |
-0.77 |
11.2 |
87 |
3 |
1 |
2 |
0 |
0 |
0 |
0 |
DA 25 A DC 26 A DG 27 A DA 28 A DC 29 A DT 30 A D
A 31 A DT 40 A DA 41 A DT 42 A DT 28 B DG 29 B DA
30 B DT 31 B DT 32 B DT 33 B DT 34 B DT 35 B DC
36 B DT 37 B DT 38 B DT 39 B
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9 |
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2.19 |
2.35 |
56.0 |
-0.97 |
-0.50 |
13.3 |
84 |
4 |
1 |
2 |
5 |
1 |
0 |
0 |
DT 60 A DT 61 A DA 62 A DA 63 A DA 72 A DA 73 A
DT 74 A DA 57 B DA 58 B DT 66 B DT 67 B DT 68 B
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10 |
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2.51 |
2.51 |
59.7 |
-0.67 |
-0.33 |
10.2 |
84 |
3 |
2 |
3 |
4 |
1 |
1 |
0 |
DA 72 A DA 73 A DT 74 A DT 67 B DT 68 B DT 78 B
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11 |
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1.95 |
1.95 |
63.5 |
-1.61 |
-0.79 |
21.5 |
78 |
3 |
5 |
0 |
1 |
0 |
0 |
0 |
DC 20 A DA 21 A DA 25 A DC 26 A DG 27 A DA 28 A
DT 24 B DT 25 B DT 28 B DG 29 B DA 30 B DT 31 B
DT 32 B
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12 |
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1.91 |
1.91 |
64.6 |
-1.50 |
-0.64 |
19.7 |
84 |
6 |
3 |
2 |
1 |
0 |
1 |
0 |
DT 16 A DG 17 A DT 18 A DT 19 A DC 20 A DA 21 A D
A 72 A DA 12 B DT 21 B DT 22 B DT 23 B DT 24 B DT
25 B
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13 |
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1.51 |
1.92 |
90.5 |
-1.28 |
-0.71 |
14.2 |
85 |
5 |
3 |
2 |
2 |
0 |
0 |
0 |
DA 25 A DC 26 A DG 27 A DA 28 A DT 60 A DT 61 A
DT 22 B DT 23 B DT 28 B DG 29 B DA 30 B DT 31 B
DT 32 B DA 57 B DA 58 B
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14 |
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1.48 |
1.49 |
91.9 |
-1.57 |
-0.74 |
20.2 |
85 |
7 |
6 |
3 |
2 |
0 |
0 |
0 |
DC 20 A DC 26 A DG 27 A DA 28 A DC 29 A DT 30 A D
A 31 A DT 40 A DA 41 A DT 42 A DT 24 B DT 25 B DT
32 B DT 33 B DT 34 B DT 35 B DC 36 B DT 37 B DT
38 B DT 39 B
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15 |
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1.64 |
1.96 |
92.4 |
-1.33 |
-0.70 |
16.9 |
88 |
4 |
5 |
3 |
2 |
1 |
0 |
0 |
DT 13 A DT 14 A DT 15 A DT 16 A DA 72 A DA 12 B D
A 14 B DA 15 B DA 16 B DC 17 B
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16 |
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1.51 |
1.94 |
108.9 |
-1.61 |
-0.70 |
17.7 |
85 |
9 |
4 |
4 |
2 |
0 |
0 |
0 |
DC 26 A DG 27 A DA 28 A DC 29 A DT 30 A DA 31 A
DT 40 A DA 41 A DT 60 A DT 61 A DT 22 B DT 23 B
DT 32 B DT 33 B DT 34 B DT 35 B DC 36 B DT 37 B
DT 38 B DT 39 B DA 57 B DA 58 B
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17 |
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1.47 |
1.55 |
110.0 |
-1.14 |
-0.55 |
14.1 |
85 |
5 |
3 |
2 |
4 |
1 |
0 |
0 |
DT 13 A DT 14 A DT 16 A DG 17 A DT 18 A DT 19 A
DC 20 A DA 21 A DA 15 B DA 16 B DC 17 B DT 22 B
DT 23 B DT 24 B DT 25 B
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18 |
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2.02 |
2.02 |
117.7 |
-1.40 |
-0.68 |
18.4 |
80 |
8 |
6 |
1 |
2 |
0 |
1 |
0 |
DT 16 A DG 17 A DT 18 A DA 25 A DC 26 A DG 27 A D
A 28 A DA 72 A DA 12 B DT 21 B DT 22 B DT 23 B DT
28 B DG 29 B DA 30 B DT 31 B DT 32 B
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19 |
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1.63 |
1.62 |
136.1 |
-1.71 |
-0.69 |
21.2 |
81 |
12 |
7 |
3 |
2 |
0 |
1 |
0 |
DT 16 A DG 17 A DT 18 A DC 26 A DG 27 A DA 28 A
DC 29 A DT 30 A DA 31 A DT 40 A DA 41 A DA 72 A D
A 12 B DT 21 B DT 22 B DT 23 B DT 32 B DT 33 B DT
34 B DT 35 B DC 36 B DT 37 B DT 38 B DT 39 B
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20 |
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1.48 |
1.56 |
158.8 |
-1.17 |
-0.58 |
14.3 |
83 |
7 |
6 |
2 |
5 |
1 |
0 |
0 |
DT 13 A DT 14 A DT 16 A DG 17 A DT 18 A DA 25 A
DC 26 A DG 27 A DA 28 A DA 15 B DA 16 B DC 17 B D
A 18 B DT 22 B DT 23 B DT 28 B DG 29 B DA 30 B DT
31 B DT 32 B
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21 |
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1.29 |
1.44 |
180.7 |
-1.37 |
-0.62 |
16.4 |
83 |
11 |
7 |
4 |
5 |
1 |
0 |
0 |
DT 13 A DT 14 A DT 16 A DG 17 A DT 18 A DC 26 A
DG 27 A DA 28 A DC 29 A DT 30 A DA 31 A DT 40 A D
A 41 A DT 42 A DA 15 B DA 16 B DC 17 B DT 22 B DT
23 B DT 32 B DT 33 B DT 34 B DT 35 B DC 36 B DT
37 B DT 38 B DT 39 B
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22 |
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1.20 |
2.09 |
199.1 |
-1.14 |
-0.13 |
18.2 |
85 |
12 |
6 |
6 |
12 |
4 |
2 |
0 |
DG -2 A DT 3 A DG 4 A DA 72 A DA 12 B DT 67 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program