PDBsum entry 9f12 Go to PDB code:  Tunnel analysis for: 9f12 calculated with MOLE 2.0 PDB id 9f12 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.19 26.9 -0.08 -0.18 10.1 72 3 0 0 2 2 1 0  DA 39 A DA 42 B DA 43 B 2 1.20 1.20 31.1 -0.85 -0.40 14.1 73 3 1 1 1 2 2 0  DA 39 A DT 40 A DT 35 B 3 1.20 1.20 36.0 -0.92 -0.47 13.2 72 3 0 1 1 2 2 0  DA 39 A DT 40 A DA 41 A DT 42 A DA 43 B DA 44 B 4 1.20 1.20 38.8 -0.60 -0.32 10.5 70 3 0 1 1 2 2 0  DG 36 A DA 37 A DA 38 A DA 39 A DT 40 A DT 35 B 5 1.21 1.21 43.0 -0.71 -0.44 10.5 68 5 0 0 1 2 3 0  DA 39 A DT 40 A DA 41 A DA 43 B DA 44 B DT 45 B DG 47 B DA 48 B 6 1.19 1.19 43.1 -0.71 -0.37 13.3 74 4 0 0 2 2 1 0  DA 39 A DT 40 A DT 39 B DA 40 B DT 41 B DA 42 B D A 43 B 7 1.71 1.71 16.0 -1.75 -0.59 24.4 89 4 2 1 1 0 0 0   8 1.51 2.90 16.1 -2.17 -0.56 29.1 92 3 2 2 2 0 0 0   9 1.31 1.63 16.2 -0.16 -0.41 9.1 97 1 2 4 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.