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PDBsum entry 8yn5

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8yn5 calculated with MOLE 2.0 PDB id
8yn5
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.11 3.27 41.1 -1.17 -0.31 19.5 82 4 3 3 2 3 0 0  CLR 703 R CLR 705 R
2 1.30 1.31 66.6 -1.56 -0.63 19.7 82 5 5 3 3 1 0 1  
3 1.45 3.52 68.0 -1.39 -0.22 19.9 88 9 2 4 4 3 0 0  CLR 703 R CLR 705 R
4 1.46 3.33 80.9 -1.38 -0.41 17.9 88 10 5 7 4 2 0 0  CLR 703 R
5 2.29 3.24 39.4 -1.27 -0.46 16.6 85 7 2 5 3 1 2 2  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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