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PDBsum entry 8yn5
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Tunnel analysis for: 8yn5 calculated with  MOLE 2.0
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PDB id
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8yn5
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.33 |
1.50 |
15.0 |
-0.24 |
0.28 |
20.0 |
86 |
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4 |
1 |
1 |
4 |
1 |
0 |
0 |
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2 |
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1.59 |
1.68 |
16.2 |
-1.60 |
-0.08 |
22.1 |
86 |
5 |
1 |
2 |
2 |
1 |
0 |
0 |
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3 |
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2.30 |
3.16 |
17.2 |
-1.68 |
-0.45 |
20.9 |
86 |
5 |
1 |
1 |
3 |
1 |
0 |
0 |
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4 |
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2.63 |
2.73 |
21.4 |
-0.73 |
-0.39 |
14.9 |
87 |
2 |
1 |
4 |
3 |
0 |
1 |
3 |
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5 |
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2.66 |
2.74 |
25.0 |
-0.90 |
-0.44 |
14.7 |
84 |
3 |
1 |
4 |
2 |
0 |
2 |
3 |
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6 |
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1.58 |
1.65 |
27.7 |
-0.73 |
-0.46 |
13.0 |
90 |
2 |
1 |
5 |
4 |
0 |
1 |
2 |
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7 |
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1.28 |
2.13 |
29.0 |
-0.48 |
0.76 |
7.1 |
57 |
1 |
3 |
0 |
2 |
11 |
0 |
1 |
HSM 701 R
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8 |
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1.30 |
2.00 |
32.0 |
-0.25 |
0.73 |
6.1 |
63 |
1 |
3 |
1 |
5 |
11 |
0 |
1 |
HSM 701 R
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9 |
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1.28 |
1.51 |
32.9 |
-0.63 |
0.64 |
7.9 |
62 |
1 |
3 |
1 |
4 |
12 |
0 |
1 |
HSM 701 R
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program