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PDBsum entry 8y1h
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Pore analysis for: 8y1h calculated with MOLE 2.0 PDB id
8y1h
Pores calculated on whole structure Pores calculated excluding ligands
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22 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.36 1.46 28.4 0.26 -0.02 7.1 75 1 2 2 3 2 1 1  NAG 2011 B NAG 2016 C
2 1.21 2.64 51.8 -0.33 0.16 11.0 82 4 1 5 7 5 1 0  
3 2.20 3.30 68.7 -1.02 -0.47 11.3 90 3 4 14 4 3 0 0  NAG 2003 A
4 1.89 1.89 73.6 -0.86 -0.13 13.3 78 4 2 7 5 5 1 0  
5 1.35 2.91 84.3 -1.13 -0.28 14.2 85 7 2 13 9 5 1 0  
6 1.30 1.44 88.6 -1.54 -0.27 17.7 82 10 6 12 11 3 7 0  NAG 2017 A
7 2.40 3.97 96.5 -1.16 -0.37 13.6 89 6 4 15 11 2 3 0  
8 2.22 3.31 104.9 -0.91 -0.22 14.3 87 7 5 14 11 4 3 0  
9 1.18 1.16 118.9 -0.39 -0.09 5.9 81 5 2 21 22 9 8 0  NAG 2017 A
10 1.20 1.96 129.6 -0.80 -0.15 10.8 85 4 6 16 10 8 0 1  NAG 2003 A
11 1.90 1.92 138.5 -1.17 -0.38 15.9 88 7 8 20 12 4 5 0  NAG 2003 A
12 1.85 4.70 143.5 -0.91 -0.17 15.2 86 8 5 13 8 6 3 0  
13 2.39 2.81 144.7 -1.56 -0.47 15.4 89 13 8 24 8 2 4 0  NAG 2003 A NAG 2013 A
14 1.24 2.83 151.6 -1.70 -0.47 18.1 86 17 10 21 10 3 5 0  
15 1.88 1.89 150.4 -2.12 -0.62 18.2 88 15 9 28 5 5 4 0  
16 2.35 2.52 153.3 -1.53 -0.47 16.5 89 8 7 17 8 4 3 0  NAG 2003 A
17 2.24 2.91 162.6 -1.51 -0.47 15.7 88 14 9 31 8 6 4 0  NAG 2013 A
18 1.92 1.91 167.2 -0.81 -0.12 15.5 84 9 6 17 11 8 7 0  
19 1.91 1.97 169.5 -0.78 -0.26 14.1 88 8 7 24 14 7 5 0  
20 2.33 2.67 165.4 -1.37 -0.30 16.0 88 9 7 17 14 4 6 0  
21 1.37 2.96 179.3 -1.06 -0.30 16.6 87 13 8 22 16 6 6 0  
22 1.23 1.29 203.1 -0.55 -0.01 10.3 84 7 7 21 21 12 4 1  
23 1.87 1.83 230.0 -1.14 -0.30 15.5 88 10 10 27 17 7 8 0  
24 1.23 1.50 232.5 -1.40 -0.33 13.9 86 16 12 36 14 11 4 1  NAG 2013 A
25 1.48 1.74 228.3 -0.89 -0.32 11.1 93 6 8 27 18 4 1 0  NAG 2003 A NAG 2013 A NAG 2014 A NAG 2017 A
26 1.40 2.94 239.8 -1.35 -0.34 17.6 87 14 11 24 19 6 9 0  
27 1.57 1.77 239.8 -0.99 -0.37 12.1 91 7 8 31 18 8 1 0  NAG 2013 A NAG 2014 A NAG 2017 A
28 2.29 2.61 256.2 -1.74 -0.50 16.9 88 20 13 37 12 7 7 0  NAG 2013 A
29 1.25 2.17 309.3 -1.02 -0.26 11.3 88 9 11 37 23 13 2 1  NAG 2013 A NAG 2014 A NAG 2017 A NAG 2009 C
30 1.53 1.82 333.4 -1.35 -0.42 14.1 90 13 12 37 22 9 4 0  NAG 2013 A NAG 2014 A NAG 2017 A
31 1.19 1.27 46.5 -0.50 -0.03 13.2 83 2 1 2 3 1 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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