PDBsum entry 8y1h Go to PDB code:  Tunnel analysis for: 8y1h calculated with MOLE 2.0 PDB id 8y1h Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.39 15.5 -0.29 0.06 5.5 81 0 1 1 1 2 0 0   2 1.15 1.65 24.0 -0.52 -0.09 7.5 77 2 0 2 1 2 0 2   3 1.33 1.33 20.1 0.84 0.12 8.7 84 1 2 2 5 2 0 0   4 1.19 1.37 16.7 -0.78 -0.38 9.2 72 1 0 2 2 1 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.