PDBsum entry 8x0h

Pore analysis for: 8x0h calculated with

MOLE 2.0

PDB id

8x0h

Pores calculated on whole structure

Pores calculated excluding ligands

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16 pores, coloured by radius

18 pores, coloured by radius

18 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.08

2.72

25.7

-0.26

-0.03

5.1

89

1

1

6

4

1

1

0

2

1.24

1.31

28.9

0.49

0.24

9.6

80

3

2

1

9

1

0

1

3

1.30

3.00

37.0

-0.63

-0.11

7.2

85

2

1

9

4

3

0

0

4

1.24

1.82

50.3

0.68

0.20

5.9

78

3

0

4

12

2

1

0

5

1.41

1.40

60.5

-1.38

-0.19

21.5

76

8

2

3

3

2

1

0

6

1.17

1.28

82.1

-1.68

-0.32

13.0

74

3

5

6

1

5

2

0

7

1.24

1.78

93.1

-0.69

-0.05

14.3

80

7

3

5

11

1

2

0

8

1.36

2.82

133.5

-1.59

-0.11

19.1

80

5

10

6

7

5

1

0

NAG 901 B

9

1.18

2.57

140.0

-1.27

-0.20

14.3

79

4

9

7

8

5

2

0

10

1.25

1.26

30.7

1.60

0.51

3.0

73

1

0

1

6

3

0

0

11

1.14

1.26

31.5

-0.14

0.35

17.1

75

2

1

1

5

3

1

1

12

1.12

1.91

34.1

-0.71

0.00

12.8

80

3

1

2

4

2

1

1

13

1.25

1.27

37.9

-0.25

0.15

15.8

77

6

0

0

5

3

0

0

14

1.21

1.32

39.0

0.27

0.30

7.5

76

2

0

3

4

5

1

1

15

1.28

1.97

40.2

0.85

0.55

9.0

76

1

1

0

10

2

1

0

16

1.17

2.36

94.0

0.26

0.06

9.0

84

6

1

2

12

5

1

1

17

1.44

1.73

106.1

1.20

0.68

7.9

78

4

2

1

19

5

1

1

18

1.24

1.26

106.3

1.21

0.63

6.4

70

5

0

2

13

7

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.