PDBsum entry 8w3d

Pore analysis for: 8w3d calculated with

MOLE 2.0

PDB id

8w3d

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.30

1.46

33.1

-0.37

-0.09

19.9

76

5

5

0

5

2

0

0

TZ0 801 C

2

3.21

3.43

33.7

-2.37

-0.55

27.9

78

8

3

2

1

2

1

0

3

1.77

1.95

42.4

-1.73

-0.42

25.1

85

5

2

1

3

0

0

0

4

2.58

3.67

56.1

-2.07

-0.45

22.5

74

10

3

2

0

4

1

0

SO4 805 B

5

1.48

2.11

65.9

-0.99

-0.33

20.4

80

3

7

5

5

2

3

0

6

2.24

3.97

79.6

-3.05

-0.59

38.1

78

12

9

3

2

1

1

0

SO4 805 B

7

1.83

1.94

90.3

-1.30

-0.42

18.6

84

8

9

7

5

1

3

0

8

2.09

3.10

102.6

-2.40

-0.49

31.1

82

11

6

4

4

1

1

0

SO4 805 B

9

2.08

3.10

125.3

-2.64

-0.52

32.0

81

15

7

7

5

3

1

0

10

1.46

2.13

128.2

-1.48

-0.43

24.6

79

11

13

3

7

4

1

0

11

1.74

1.74

36.8

-2.25

-0.44

28.5

74

5

5

1

2

1

0

0

GOL 802 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.