PDBsum entry 8w3d Go to PDB code:  Tunnel analysis for: 8w3d calculated with MOLE 2.0 PDB id 8w3d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.93 120.4 -0.94 -0.29 19.0 83 12 10 5 12 3 2 1   2 1.78 1.85 15.6 -2.24 -0.58 27.6 83 4 1 1 1 0 0 0  GOL 802 A 3 1.57 2.44 18.4 -1.61 -0.56 16.6 81 0 2 1 2 0 1 0   4 1.80 2.06 28.8 -2.50 -0.77 28.8 86 1 3 2 3 0 1 0   5 1.37 2.48 15.0 -0.70 -0.02 18.6 72 1 2 0 4 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.