PDBsum entry 8tnh

Tunnel analysis for: 8tnh calculated with

MOLE 2.0

PDB id

8tnh

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.13

1.40

107.8

-0.77

-0.28

12.0

79

8

3

7

12

4

2

2

NAG 609 E NAG 1 e

2

1.10

1.38

109.1

-0.63

-0.26

12.1

81

9

3

5

10

3

2

2

NAG 610 A

3

1.03

2.87

15.2

0.06

0.27

9.8

62

1

1

1

3

3

1

0

4

1.30

1.88

15.1

-0.01

-0.10

2.5

82

0

0

3

2

1

1

0

5

1.31

1.32

18.1

-1.10

-0.27

8.8

80

1

0

4

2

1

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.