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PDBsum entry 8sge

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 8sge calculated with MOLE 2.0 PDB id
8sge
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.36 2.66 24.2 -1.79 -0.38 21.7 81 3 3 2 2 1 1 0  
2 1.35 2.56 36.7 -1.94 -0.33 21.7 80 7 2 2 3 2 1 0  
3 1.35 2.20 42.5 -2.20 -0.31 26.1 76 10 2 0 3 3 1 0  
4 1.34 2.25 43.2 -1.38 -0.25 18.1 75 4 1 1 2 3 2 0  
5 1.99 1.99 17.2 -0.42 -0.56 3.0 68 0 0 0 2 2 1 0  GOL 401 A
6 1.24 1.24 28.2 -0.50 -0.57 4.9 77 1 2 0 3 2 1 0  GOL 401 B
7 1.83 3.33 17.4 -1.04 0.27 18.5 81 4 1 2 2 2 0 0  ZWS 405 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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