PDBsum entry 8rjo

Pore analysis for: 8rjo calculated with

MOLE 2.0

PDB id

8rjo

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 pore, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.49

1.54

25.9

-0.65

-0.43

7.7

82

2

1

3

2

0

3

0

EL5 601 B

2

1.45

1.81

29.5

-0.11

-0.12

9.1

83

2

1

4

6

0

1

1

EL5 601 B

3

1.31

1.65

32.0

-1.16

-0.06

11.7

76

3

1

3

3

2

3

1

EL5 601 A

4

1.43

1.59

36.8

-1.31

-0.16

16.1

80

4

2

2

5

1

3

0

EL5 601 B

5

1.84

4.04

36.8

-1.91

-0.44

23.6

78

2

5

0

2

2

2

0

6

1.44

1.54

39.3

-0.37

-0.04

10.7

80

4

1

3

7

1

4

1

EL5 601 B

7

1.50

1.50

42.2

-1.13

-0.19

12.8

82

6

2

4

5

1

2

0

EL5 601 B

8

1.71

1.72

49.4

-0.67

0.04

14.2

82

6

1

3

10

1

2

1

EL5 601 B

9

1.32

1.65

56.7

0.15

0.08

10.5

84

3

3

4

8

1

2

1

EL5 601 A

10

1.51

1.60

59.6

-0.14

-0.05

11.4

82

4

4

4

7

1

4

1

EL5 601 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.