PDBsum entry 8k5a Go to PDB code:  Tunnel analysis for: 8k5a calculated with MOLE 2.0 PDB id 8k5a Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 2.27 53.6 0.21 0.29 14.1 82 5 3 2 13 2 1 0   2 1.29 2.00 60.3 -0.55 0.08 15.3 83 5 5 3 11 3 0 0   3 1.31 1.33 65.6 -0.62 0.10 18.5 81 7 5 4 11 4 0 0   4 1.28 2.20 81.5 -1.03 -0.07 17.9 83 6 7 6 14 5 2 0   5 1.32 1.38 100.1 -1.12 -0.11 19.3 82 10 11 7 15 5 3 0   6 1.36 1.59 15.4 -1.19 -0.29 20.4 80 3 1 2 3 1 0 0   7 1.29 1.30 16.2 2.63 0.77 3.6 71 1 3 0 8 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.