PDBsum entry 8jd6 Go to PDB code:  Pore analysis for: 8jd6 calculated with MOLE 2.0 PDB id 8jd6 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   25 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.07 3.24 27.3 -1.11 -0.05 17.5 73 4 1 2 3 2 1 3   2 1.88 2.50 27.6 -2.38 -0.90 29.1 83 2 8 3 0 0 2 0   3 1.93 2.53 42.9 -2.39 -0.83 26.5 82 4 11 5 0 0 4 0   4 2.05 3.26 45.5 -1.26 -0.19 18.4 75 6 3 3 3 1 1 3   5 2.06 3.24 52.5 -1.35 -0.32 17.5 83 7 4 5 4 1 1 2   6 1.44 1.59 76.7 -0.75 -0.15 21.3 86 7 6 2 8 0 0 0   7 1.21 1.38 203.1 -1.55 -0.54 18.6 85 13 10 12 11 1 4 1   8 2.94 3.44 26.3 -0.47 0.17 12.5 84 3 1 1 5 2 1 0   9 1.32 2.09 26.8 0.75 0.45 4.6 82 2 0 0 4 3 1 0   10 1.34 1.89 30.3 0.80 0.36 7.4 73 3 1 3 7 3 0 1   11 1.32 2.09 35.1 0.65 0.49 2.7 85 1 0 1 6 4 1 0   12 2.21 2.38 35.7 -0.54 -0.25 11.2 83 2 2 3 4 3 0 0   13 1.43 2.35 41.4 0.54 0.25 14.2 77 3 2 3 8 1 0 0   14 1.26 2.52 45.4 -0.19 -0.02 13.0 82 4 1 3 9 1 0 2   15 1.68 1.68 54.3 -0.98 -0.37 8.5 82 1 2 3 3 2 0 0   16 1.59 2.56 62.9 -0.77 -0.33 10.7 70 1 2 3 3 4 0 0   17 1.97 3.38 64.1 -1.20 -0.29 13.7 80 3 3 4 3 4 1 0   18 1.34 1.57 93.0 -0.57 -0.11 12.8 80 4 1 5 11 5 1 1   19 1.41 2.39 36.4 -1.57 -0.54 16.9 89 6 2 5 2 1 0 0   20 1.43 3.69 45.5 -1.46 -0.63 14.3 87 4 2 5 1 2 2 0   21 1.37 1.38 51.7 -0.46 -0.43 5.9 84 1 1 4 4 2 0 0   22 1.37 1.38 58.2 -0.48 -0.33 4.6 83 2 2 5 3 3 0 0   23 1.37 1.38 77.0 -0.63 -0.50 5.7 82 0 3 4 3 2 3 0   24 1.49 1.52 80.0 -1.39 -0.32 15.8 87 6 6 7 7 4 1 0   25 1.28 1.45 81.3 -0.99 -0.32 11.3 89 6 4 7 7 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.