PDBsum entry 8jd6 Go to PDB code:  Tunnel analysis for: 8jd6 calculated with MOLE 2.0 PDB id 8jd6 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.34 1.34 28.5 -1.23 -0.58 15.1 90 2 1 3 1 0 1 1   2 1.31 1.32 30.9 -1.74 -0.53 19.7 86 6 3 3 2 1 0 1   3 1.32 1.32 37.0 -1.33 -0.66 14.3 85 2 1 3 1 1 2 1   4 1.18 2.44 24.4 0.53 0.18 10.2 67 2 1 0 5 3 0 0   5 1.19 2.33 24.4 1.22 0.42 1.6 90 0 0 4 7 1 0 0   6 1.20 1.20 27.1 0.72 0.27 4.7 82 1 0 2 7 2 0 1   7 1.26 2.32 27.6 0.64 0.08 2.2 87 0 0 3 7 1 0 0   8 1.21 1.21 21.1 0.47 0.26 7.6 80 1 1 2 4 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.