spacer
spacer

PDBsum entry 8ia2

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 8ia2 calculated with MOLE 2.0 PDB id
8ia2
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
18 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.59 2.53 25.5 -1.14 0.11 11.5 77 2 3 1 2 4 0 0  
2 1.16 2.42 28.2 1.78 0.53 1.3 78 0 0 3 7 2 0 0  
3 1.73 2.92 33.5 -2.14 -0.39 23.1 81 4 4 4 5 2 0 0  
4 1.19 1.76 38.0 0.80 0.17 7.4 74 2 2 1 5 4 0 0  
5 1.19 1.65 53.7 0.29 0.06 6.4 85 2 2 5 9 4 0 0  
6 1.20 1.78 55.5 0.58 0.24 6.8 76 3 1 3 10 5 0 0  
7 1.22 1.66 71.2 0.32 0.16 5.6 85 3 1 7 14 4 0 0  
8 1.24 1.49 84.5 -1.43 -0.38 17.7 89 10 6 10 6 4 1 0  
9 1.21 1.37 91.2 -1.40 -0.36 17.5 87 8 7 10 7 7 1 0  
10 1.40 1.51 98.4 -0.52 -0.07 15.6 88 8 4 5 11 3 0 1  
11 1.19 1.37 106.3 -1.29 -0.29 13.6 84 6 5 12 9 7 1 0  
12 1.18 2.29 109.2 -0.22 -0.10 10.6 87 9 4 10 11 6 1 0  
13 1.19 1.47 110.1 -0.81 -0.13 11.8 85 8 3 11 13 5 1 0  
14 1.39 1.46 117.3 -0.32 -0.01 10.6 85 5 2 10 13 4 0 1  
15 1.17 1.37 127.5 -0.27 0.03 9.5 86 5 5 9 13 8 1 1  
16 1.23 1.47 131.7 -0.32 0.01 9.9 88 7 4 11 13 5 1 1  
17 1.20 1.61 200.1 0.02 0.06 8.3 83 7 3 10 24 5 1 0  
18 1.75 1.91 39.5 -1.50 -0.49 17.9 83 8 3 5 1 1 2 2  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer