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PDBsum entry 8hsr

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 8hsr calculated with MOLE 2.0 PDB id
8hsr
Pores calculated on whole structure Pores calculated excluding ligands

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32 pores, coloured by radius 32 pores, coloured by radius 32 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.52 2.21 100.6 -0.07 0.06 14.7 75 9 4 3 17 2 3 0  
2 1.40 2.14 100.2 -0.67 -0.08 21.9 75 11 8 2 13 2 2 0  
3 1.34 1.31 119.4 -0.69 -0.20 19.0 78 13 8 3 15 1 2 0  A 8 R A 9 R
4 1.68 3.26 122.2 -0.97 -0.10 22.6 77 15 9 3 14 2 3 0  
5 3.37 3.72 121.4 -2.12 -0.33 33.1 78 17 11 1 6 1 2 0  A 14 R C 16 R
6 1.33 1.33 124.2 -0.74 -0.23 19.8 78 13 9 3 14 1 1 0  A 8 R A 9 R
7 1.50 2.21 126.1 -1.73 -0.33 29.8 78 15 12 2 15 1 2 0  
8 1.50 2.21 129.7 -1.31 -0.22 25.8 77 16 10 2 10 1 2 1  A 14 R C 16 R
9 2.13 2.39 133.5 -1.78 -0.34 22.9 79 8 11 7 7 5 2 0  
10 2.43 3.81 141.3 -2.39 -0.44 36.0 79 19 17 2 11 1 2 0  
11 1.32 1.30 146.8 -1.92 -0.48 29.1 81 20 14 4 12 0 1 0  A 8 R A 9 R
12 1.90 1.90 153.3 -1.88 -0.38 30.1 76 17 21 0 11 3 2 0  ADP 1000 A MG 1001 A BEF 1002 A U 13 R A 14 R
13 1.74 1.74 159.3 -1.95 -0.40 30.0 78 19 17 1 9 2 1 0  ADP 1000 A MG 1001 A BEF 1002 A U 13 R A 14 R C
16 R
14 1.91 1.96 186.4 -1.95 -0.56 28.1 77 17 23 6 15 3 6 2  U 13 R A 14 R
15 1.72 1.99 196.0 -0.66 -0.16 16.1 78 12 12 9 20 5 7 0  A 9 R
16 1.46 2.10 197.9 -0.63 -0.17 15.9 78 12 13 8 20 5 6 0  A 9 R
17 1.78 1.89 200.9 -1.25 -0.32 21.6 77 14 18 7 16 5 6 0  A 9 R C 10 R C 11 R
18 1.89 1.89 236.5 -1.65 -0.38 25.4 80 22 21 8 18 4 6 0  A 9 R
19 2.46 2.44 243.7 -1.80 -0.43 27.9 78 26 26 3 15 5 3 0  U 13 R A 14 R
20 1.57 1.61 256.6 -1.79 -0.45 27.7 78 23 28 5 16 3 6 0  U 13 R A 14 R
21 1.53 2.23 250.9 -1.48 -0.34 25.6 78 26 23 4 19 5 2 0  U 13 R
22 1.79 1.89 255.3 -1.37 -0.37 22.3 80 24 21 9 17 5 5 0  A 9 R U 13 R A 14 R
23 1.79 1.90 256.8 -1.41 -0.40 21.5 78 19 25 13 20 6 8 2  A 9 R
24 2.05 2.04 261.0 -1.78 -0.40 27.5 78 27 29 3 18 6 2 0  ADP 1000 A MG 1001 A BEF 1002 A U 13 R A 14 R
25 1.44 1.53 264.5 -1.60 -0.40 28.1 79 26 27 5 21 2 3 0  U 13 R
26 1.51 2.24 263.7 -1.50 -0.38 25.4 78 23 26 6 20 3 5 0  U 13 R
27 1.66 1.73 273.8 -1.72 -0.42 27.0 78 24 31 5 19 4 5 0  ADP 1000 A MG 1001 A BEF 1002 A U 13 R A 14 R
28 1.91 1.91 333.3 -1.38 -0.37 22.4 79 31 30 10 23 8 6 0  A 9 R U 13 R
29 1.61 1.85 346.2 -1.36 -0.37 22.0 79 28 32 13 24 6 9 0  A 9 R U 13 R
30 1.77 2.17 346.9 -1.49 -0.42 24.2 80 31 33 11 25 5 7 0  A 9 R U 13 R
31 1.30 1.30 27.2 2.27 0.46 1.1 76 0 0 1 12 1 1 0  
32 1.67 1.93 28.8 2.56 0.64 2.9 81 1 0 0 14 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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