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PDBsum entry 8hsr

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 8hsr calculated with MOLE 2.0 PDB id
8hsr
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.14 1.51 72.9 -0.27 -0.04 11.7 83 5 3 9 11 1 1 0  
2 1.20 1.90 145.4 -0.65 -0.20 18.0 82 17 6 3 18 1 0 0  C 16 R U 17 R C 18 R C 19 R A 20 R C 21 R A 22 R
U 23 R C 24 R C 27 R C 28 R U 29 R DA 22 T DG 23
T DG 24 T DT 25 T DG 26 T DG 27 T DA 28 T DT 29 T
DG 30 T
3 1.35 2.03 17.3 2.50 0.80 3.4 74 1 0 1 8 1 0 0  
4 1.33 2.38 17.6 2.50 0.80 3.8 72 1 1 1 7 1 0 0  
5 1.24 1.28 19.4 2.45 0.71 2.9 74 1 0 1 8 1 0 0  
6 1.22 1.47 16.6 2.21 0.51 5.7 75 0 2 0 5 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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