 |
PDBsum entry 8hj4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 8hj4 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
8hj4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
12 pores,
coloured by radius |
|
12 pores,
coloured by radius
|
12 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.28 |
1.28 |
37.3 |
-1.92 |
-0.63 |
23.4 |
72 |
|
2 |
0 |
0 |
0 |
0 |
0 |
0 |
|
C 36 B U 37 B U 39 B G 43 B A 44 B A 45 B A 46 B
G 47 B A 48 B
|
 |
|
2 |
 |
2.38 |
2.39 |
43.6 |
-2.35 |
-0.37 |
23.3 |
87 |
6 |
3 |
6 |
1 |
2 |
0 |
0 |
U 16 B
|
|
3 |
 |
1.43 |
2.17 |
45.9 |
-1.99 |
-0.67 |
25.8 |
85 |
3 |
5 |
5 |
2 |
1 |
1 |
0 |
U 16 B A 18 B C 19 B A 23 B
|
|
4 |
 |
1.43 |
1.52 |
81.0 |
-0.82 |
-0.37 |
18.3 |
85 |
7 |
3 |
5 |
7 |
0 |
0 |
0 |
U 16 B A 18 B C 19 B U 20 B U 21 B A 23 B C 24 B
A 62 B A 63 B U 64 B G 80 B A 81 B
|
|
5 |
 |
1.31 |
1.29 |
82.0 |
-1.84 |
-0.57 |
19.7 |
82 |
7 |
1 |
3 |
3 |
0 |
1 |
0 |
G 25 B U 26 B U 27 B U 29 B A 30 B G 31 B C 32 B
U 33 B C 36 B U 37 B U 38 B A 46 B A 48 B G 49 B
A 50 B A 51 B C 52 B C 53 B U 55 B G 57 B C 58 B
U 59 B A 60 B
|
|
6 |
 |
1.40 |
1.40 |
95.0 |
-1.35 |
-0.48 |
16.2 |
83 |
6 |
2 |
3 |
5 |
1 |
1 |
0 |
G 25 B U 26 B U 27 B U 29 B A 30 B G 31 B C 32 B
U 33 B C 36 B U 37 B U 38 B U 39 B G 43 B A 44 B
A 45 B A 46 B G 47 B A 48 B G 49 B A 50 B A 51 B
C 52 B C 53 B U 55 B G 57 B C 58 B U 59 B A 60 B
|
|
7 |
 |
1.87 |
3.18 |
101.8 |
-2.46 |
-0.53 |
32.4 |
78 |
10 |
10 |
5 |
2 |
2 |
0 |
1 |
U 16 B A 18 B C 19 B A 23 B
|
|
8 |
 |
1.20 |
1.20 |
113.4 |
-0.98 |
-0.59 |
8.8 |
85 |
4 |
0 |
3 |
1 |
0 |
0 |
0 |
G 28 B U 29 B A 30 B G 31 B C 32 B U 33 B C 36 B
U 37 B U 38 B U 39 B G 43 B A 44 B A 45 B A 46 B
G 47 B A 48 B G 49 B A 50 B A 51 B C 52 B C 53 B
U 55 B A 63 B U 64 B G 67 B G 68 B C 69 B G 80 B
A 81 B U 82 B
|
|
9 |
 |
1.22 |
1.22 |
115.3 |
-1.13 |
-0.51 |
18.9 |
87 |
7 |
3 |
5 |
4 |
0 |
1 |
0 |
U 16 B A 18 B C 19 B U 20 B U 21 B A 23 B C 24 B
G 25 B U 27 B U 29 B A 30 B G 31 B C 32 B U 33 B
C 36 B U 37 B U 38 B U 39 B G 43 B A 44 B A 45 B
A 46 B G 47 B A 48 B G 49 B A 50 B A 51 B C 52 B
C 53 B U 55 B G 57 B C 58 B U 59 B A 60 B C 61 B
A 62 B A 63 B U 64 B
|
|
10 |
 |
1.31 |
1.30 |
115.7 |
-1.15 |
-0.59 |
11.4 |
82 |
6 |
0 |
3 |
1 |
0 |
0 |
0 |
G 28 B U 29 B A 30 B G 31 B C 32 B U 33 B C 36 B
U 37 B U 38 B A 46 B A 48 B G 49 B A 50 B A 51 B
C 52 B C 53 B U 55 B A 63 B U 64 B G 67 B G 68 B
C 69 B G 80 B A 81 B U 82 B
|
|
11 |
 |
2.16 |
2.34 |
124.9 |
-1.44 |
-0.47 |
15.5 |
84 |
10 |
2 |
6 |
6 |
1 |
1 |
0 |
G 25 B U 26 B U 27 B G 28 B U 29 B A 30 B C 53 B
U 55 B C 58 B U 59 B A 60 B A 63 B U 64 B G 67 B
G 68 B C 69 B G 80 B A 81 B U 82 B
|
 |
12 |
|
1.35 |
1.35 |
181.2 |
-1.87 |
-0.49 |
27.0 |
81 |
17 |
9 |
6 |
5 |
1 |
0 |
1 |
U 16 B A 18 B C 19 B U 20 B U 21 B A 23 B C 24 B
G 25 B U 27 B U 29 B A 30 B G 31 B C 32 B U 33 B
C 36 B U 37 B U 38 B A 46 B A 48 B G 49 B A 50 B
A 51 B C 52 B C 53 B U 55 B G 57 B C 58 B U 59 B
A 60 B C 61 B A 62 B A 63 B U 64 B
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program