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PDBsum entry 8hj4
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Tunnel analysis for: 8hj4 calculated with  MOLE 2.0
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PDB id
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8hj4
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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13 tunnels,
coloured by tunnel radius |
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13 tunnels,
coloured by
tunnel radius
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13 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.20 |
1.45 |
31.1 |
-1.88 |
-0.68 |
21.2 |
83 |
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4 |
4 |
2 |
2 |
0 |
2 |
0 |
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C 101 B C 102 B U 103 B G 122 B G 123 B G 124 B
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2 |
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1.45 |
2.29 |
31.9 |
-1.24 |
-0.55 |
19.2 |
78 |
3 |
3 |
1 |
1 |
2 |
0 |
0 |
A 23 B C 24 B G 25 B U 64 B A 65 B A 66 B C 89 B
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3 |
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1.67 |
1.90 |
38.1 |
-0.06 |
-0.16 |
15.9 |
80 |
2 |
2 |
2 |
4 |
1 |
0 |
0 |
U 16 B A 18 B C 19 B U 20 B U 21 B A 23 B C 24 B
G 25 B U 64 B A 65 B A 66 B C 89 B
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4 |
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1.20 |
1.45 |
38.7 |
-1.80 |
-0.50 |
18.9 |
77 |
5 |
1 |
2 |
2 |
0 |
5 |
0 |
G 98 B C 99 B C 100 B G 124 B U 127 B
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5 |
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1.38 |
1.53 |
38.7 |
-0.73 |
-0.36 |
16.9 |
77 |
3 |
1 |
0 |
4 |
1 |
0 |
0 |
A 23 B C 24 B G 25 B A 62 B A 63 B U 64 B A 65 B
A 66 B G 68 B C 89 B
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6 |
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1.19 |
1.44 |
38.8 |
-1.94 |
-0.49 |
22.2 |
80 |
3 |
1 |
2 |
2 |
0 |
3 |
0 |
U 97 B G 98 B C 99 B C 100 B G 124 B A 126 B U
127 B
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7 |
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1.63 |
1.63 |
49.9 |
0.32 |
-0.05 |
13.8 |
75 |
2 |
3 |
2 |
5 |
1 |
0 |
0 |
A 17 B A 18 B C 19 B U 20 B U 21 B A 23 B C 24 B
G 25 B U 64 B A 65 B A 66 B C 89 B
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8 |
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1.71 |
1.71 |
54.4 |
-1.33 |
-0.55 |
15.5 |
81 |
5 |
1 |
2 |
2 |
1 |
2 |
0 |
A 23 B C 24 B G 25 B U 26 B U 27 B C 58 B U 59 B
A 60 B C 61 B A 62 B A 63 B U 64 B A 65 B A 66 B
C 89 B
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9 |
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1.70 |
1.70 |
55.6 |
-1.34 |
-0.50 |
19.8 |
82 |
5 |
1 |
0 |
1 |
1 |
0 |
0 |
A 23 B C 24 B G 25 B U 27 B U 29 B A 30 B G 31 B
C 32 B C 52 B C 53 B U 55 B G 57 B C 58 B U 59 B
A 60 B C 61 B A 62 B A 63 B U 64 B A 65 B A 66 B
C 89 B
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10 |
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1.22 |
1.41 |
61.4 |
-1.46 |
-0.63 |
17.3 |
80 |
5 |
3 |
1 |
2 |
0 |
2 |
0 |
C 69 B C 87 B A 90 B A 91 B C 92 B G 93 B C 94 B
G 124 B C 125 B A 126 B U 127 B C 128 B G 129 B U
130 B U 131 B
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11 |
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1.18 |
1.40 |
80.0 |
-2.07 |
-0.59 |
23.2 |
83 |
11 |
6 |
6 |
4 |
1 |
4 |
0 |
A 90 B A 91 B C 92 B G 93 B C 94 B G 124 B C 125
B A 126 B
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12 |
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1.25 |
1.38 |
100.4 |
-1.60 |
-0.50 |
16.2 |
85 |
9 |
9 |
10 |
9 |
2 |
4 |
0 |
A 90 B A 91 B C 92 B G 93 B C 94 B G 124 B C 125
B A 126 B
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13 |
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1.17 |
3.21 |
27.2 |
3.25 |
1.01 |
0.9 |
79 |
0 |
1 |
0 |
13 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program