PDBsum entry 8hdo Go to PDB code:  Pore analysis for: 8hdo calculated with MOLE 2.0 PDB id 8hdo Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   16 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.45 1.63 32.5 -2.90 -0.79 35.1 82 3 6 2 0 1 0 0   2 1.85 3.22 48.7 -2.15 -0.49 21.8 83 7 1 4 1 3 0 0  CLR 401 R CLR 402 R 3 1.15 1.37 69.1 -1.81 -0.45 22.4 79 6 3 3 2 1 1 0  CLR 401 R CLR 402 R 4 1.79 1.96 95.8 -1.97 -0.34 21.5 82 12 3 4 3 4 0 0  CLR 401 R CLR 402 R 5 1.40 2.17 103.5 -1.95 -0.41 19.6 83 10 2 4 3 4 1 0   6 1.56 1.60 108.0 -1.90 -0.38 21.5 83 14 6 11 4 7 0 1  CLR 401 R CLR 402 R 7 1.31 2.15 123.6 -1.81 -0.41 17.9 83 11 5 13 4 8 1 1   8 1.58 1.87 129.8 -2.17 -0.32 24.5 81 12 6 9 4 7 0 1   9 1.52 1.55 138.4 -2.06 -0.32 24.9 82 13 7 7 5 6 0 1   10 1.29 1.43 26.9 -2.28 -0.44 31.4 83 5 3 3 3 0 0 0   11 1.47 1.66 27.2 -1.09 -0.16 22.1 81 4 2 3 4 0 0 0   12 1.30 1.44 31.4 -1.73 -0.34 26.1 82 4 3 6 5 0 0 0   13 1.47 1.65 31.6 -0.76 -0.13 17.5 81 3 2 6 6 0 0 0   14 1.87 2.20 34.2 -2.17 -0.48 24.5 81 5 3 6 4 0 0 0   15 1.87 2.31 35.4 -1.74 -0.50 19.8 85 6 2 4 3 0 0 0   16 1.29 1.43 36.9 -1.46 -0.48 18.4 89 6 2 5 5 0 0 0   17 1.47 1.66 37.5 -0.55 -0.24 12.0 88 5 1 5 6 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.