PDBsum entry 8hdo Go to PDB code:  Tunnel analysis for: 8hdo calculated with MOLE 2.0 PDB id 8hdo Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.40 3.70 26.9 -1.14 -0.30 13.1 84 3 2 3 2 3 0 0   2 1.41 3.79 39.5 -1.33 -0.34 14.8 82 6 3 6 2 4 0 0  CLR 401 R CLR 402 R 3 1.35 1.99 48.5 -1.43 -0.46 12.7 83 5 2 6 2 4 1 0   4 1.22 2.05 35.3 1.30 0.47 7.7 86 1 1 3 11 3 1 0  I5D 408 R 5 1.17 2.90 36.4 0.71 0.51 8.3 84 2 0 4 11 3 0 0  I5D 408 R Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.