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PDBsum entry 8h0v
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 8h0v calculated with MOLE 2.0 PDB id
8h0v
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.08 3.96 37.2 -0.89 -0.41 10.3 87 2 1 3 2 0 1 0  DA -111 N A -2 P G -1 P DC 108 T DT 109 T
2 1.64 2.35 85.1 -1.21 -0.28 16.7 77 5 4 4 4 2 2 0  DA -111 N DA -110 N DA -109 N DG -108 N DC -
107 N DA -106 N DA -105 N DC 91 N DT -
94 T DC 108 T DT 109 T
3 1.49 1.70 86.1 -1.91 -0.47 23.9 85 11 7 7 8 1 1 0  A -2 P G -1 P
4 1.55 1.61 92.3 -1.26 -0.42 16.8 84 9 6 5 8 3 4 0  A -2 P G -1 P C 0 P
5 1.71 2.21 96.3 -1.61 -0.78 14.9 93 7 2 6 0 0 0 0  DA 50 N DA 57 N DA 59 N DT 60 N DT -61 T DA -
55 T DC -54 T DA -53 T DC -52 T
6 2.95 3.24 97.5 -1.71 -0.63 20.3 86 7 2 4 1 0 0 0  DA -45 N DT -36 N DA -
35 N DA 29 N DT 30 N DT 31 N DC 37 N DG 40 N DT
41 N DG -36 T DG -35 T DG -33 T DT -
32 T DG 29 T DT 31 T DC 40 T DC 41 T
7 1.26 1.66 106.7 -1.67 -0.35 17.7 84 7 4 7 7 2 1 0  DC 91 N DT -94 T DA 83 T DC 84 T
8 1.30 1.97 129.9 -0.95 -0.20 15.0 75 7 3 6 5 5 0 1  DA 87 N DA 88 N DT 89 N DT 90 N DC 91 N DT -
87 T DT -86 T DC -85 T DG -84 T DC -83 T
9 1.45 1.69 150.2 -1.59 -0.39 25.0 81 13 16 6 8 5 2 0  
10 1.57 2.84 150.2 -1.22 -0.26 22.5 85 14 11 9 16 3 1 0  A -2 P G -1 P
11 1.17 1.29 154.3 -1.40 -0.65 15.5 78 8 2 3 2 0 2 0  DA -15 N DA -14 N DC -12 N DG -11 N DC -10 N DG -
7 N DT -6 N DA -5 N DC -4 N DG -3 N DC -2 N DG -
1 N DA 50 N DT 60 N DA 61 N DA 71 N DG -66 T DA -
55 T DC -54 T DA -53 T DC -
52 T DG 4 T DT 5 T DA 6 T DC 7 T DG 8 T DT 9 T DG
10 T DC 11 T DC 19 T
12 1.31 1.44 160.2 -1.51 -0.66 17.2 83 11 3 2 1 0 2 0  DA -15 N DA -14 N DC -12 N DG -11 N DC -10 N DG -
7 N DT -6 N DA -5 N DC -4 N DG -3 N DC -2 N DG -
1 N DA 57 N DA 59 N DT 60 N DA 61 N DA 71 N DG -
66 T DT -
61 T DG 4 T DT 5 T DA 6 T DC 7 T DG 8 T DT 9 T DG
10 T DC 11 T
13 1.27 2.26 185.5 -1.52 -0.36 22.5 78 12 14 8 8 7 1 0  DA -106 N DA -105 N DC 108 T DT 109 T
14 2.11 2.16 193.4 -1.96 -0.49 23.9 81 21 12 10 10 3 2 0  DA -95 N DC -
94 N A 1 P A 2 P U 3 P A 4 P G 5 P G 6 P DG 94 T
DT 95 T DA 96 T DC 99 T DC 102 T DT 103 T DA 104
T DT 105 T DT 106 T DC 108 T DT 109 T
15 1.44 1.41 210.5 -1.75 -0.42 23.5 80 19 17 9 11 5 3 0  DC 91 N DT -94 T
16 1.54 1.54 220.2 -1.99 -0.55 24.4 80 17 12 7 6 2 1 0  DA -95 N DC -94 N DG -93 N DT -
86 N DA 87 N DA 88 N DT 89 N DT 90 N DC 91 N A 1
P A 2 P U 3 P A 4 P G 5 P G 6 P DT -87 T DT -
86 T DC -85 T DG -84 T DC -
83 T DG 94 T DT 95 T DA 96 T DC 99 T DC 102 T DT
103 T DA 104 T DT 105 T DT 106 T DC 108 T
17 1.67 2.85 225.6 -1.90 -0.44 21.8 82 27 10 14 17 4 4 0  DC -94 N DG -93 N DG -92 N DT -91 N DC -
90 N DA 86 T DG 94 T
18 1.28 2.53 231.3 -1.67 -0.31 22.0 82 25 14 20 15 8 2 0  
19 1.37 2.47 235.6 -1.65 -0.35 21.6 83 25 14 18 20 6 2 0  DC -94 N DG -93 N DG -92 N DT -91 N DC -
90 N DA 86 T DG 94 T
20 1.45 1.45 253.6 -1.79 -0.42 22.6 80 25 11 10 11 5 3 0  DA 87 N DA 88 N DT 89 N DT 90 N DC 91 N DT -
87 T DT -86 T DC -85 T DG -84 T DC -83 T
21 1.28 1.44 258.6 -2.20 -0.59 25.1 83 12 15 15 8 3 2 0  DA -95 N DC -
94 N A 1 P A 2 P U 3 P A 4 P G 5 P G 6 P DG 94 T
DT 95 T DA 96 T DC 99 T DC 102 T DT 103 T DA 104
T DT 105 T DT 106 T DC 108 T DT 109 T
22 1.51 1.51 257.7 -1.92 -0.49 22.8 81 24 11 8 15 3 3 0  DC -94 N DG -93 N DG -92 N DT -91 N DC -90 N DT -
86 N DA 87 N DA 88 N DT 89 N DT 90 N DC 91 N DT -
87 T DT -86 T DC -85 T DG -84 T DC -
83 T DA 86 T DG 94 T
23 1.28 1.44 290.7 -2.02 -0.52 21.9 84 18 13 18 15 4 4 0  DC -94 N DG -93 N DG -92 N DT -91 N DC -
90 N DA 86 T DG 94 T
24 1.71 1.70 282.6 -1.75 -0.44 18.7 82 30 9 17 15 6 2 0  DC -94 N DG -93 N DG -92 N DT -91 N DC -90 N DT -
86 N DT -85 N DC 91 N DT -
94 T DC 82 T DA 83 T DC 84 T DA 85 T DA 86 T DG
94 T
25 1.63 1.61 286.5 -1.58 -0.35 17.9 82 26 13 23 16 8 0 1  DC -94 N DG -93 N DG -92 N DT -91 N DC -90 N DT -
86 N DT -85 N DC 91 N DT -
94 T DC 82 T DA 83 T DC 84 T DA 85 T DA 86 T DG
94 T
26 1.28 1.44 296.4 -1.80 -0.38 22.8 83 16 18 25 14 8 2 0  
27 1.50 1.50 300.2 -1.72 -0.48 18.8 81 24 9 13 12 5 1 0  DC -94 N DG -93 N DG -92 N DT -91 N DC -90 N DT -
86 N DT -
85 N DA 87 N DA 88 N DT 89 N DT 90 N DC 91 N DT -
94 T DT -87 T DT -86 T DC -85 T DG -84 T DC -
83 T DC 82 T DA 83 T DC 84 T DA 85 T DA 86 T DG
94 T
28 1.28 1.44 318.8 -2.02 -0.51 23.8 82 16 14 15 9 5 3 0  DA 87 N DA 88 N DT 89 N DT 90 N DC 91 N DT -
87 T DT -86 T DC -85 T DG -84 T DC -83 T
29 1.28 1.44 347.7 -1.90 -0.52 19.9 84 21 12 22 13 6 2 0  DC -94 N DG -93 N DG -92 N DT -91 N DC -90 N DT -
86 N DT -85 N DC 91 N DT -
94 T DC 82 T DA 83 T DC 84 T DA 85 T DA 86 T DG
94 T
30 1.08 2.20 491.4 -1.39 -0.46 18.0 83 30 14 22 24 5 3 0  DC -94 N DG -93 N DG -92 N DT -91 N DC -90 N DT -
79 N DG -78 N DG -77 N DA -5 N DC -
4 N DC 37 N DT 79 N DG 80 N DA -77 T DA -76 T DG -
75 T DG -33 T DT -32 T DA -
1 T DG 0 T DG 2 T DA 79 T DA 80 T DA 81 T DC 82 T
DA 83 T DC 84 T DA 85 T DA 86 T DG 94 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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