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PDBsum entry 8gnh
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Pore analysis for: 8gnh calculated with  MOLE 2.0
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PDB id
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8gnh
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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18 pores,
coloured by radius |
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29 pores,
coloured by radius
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29 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.87 |
3.95 |
28.7 |
-1.24 |
-0.32 |
9.1 |
82 |
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2 |
1 |
6 |
4 |
1 |
0 |
0 |
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2 |
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1.54 |
2.05 |
30.0 |
-0.55 |
-0.15 |
5.6 |
80 |
1 |
0 |
2 |
3 |
1 |
2 |
0 |
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3 |
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1.24 |
1.24 |
31.9 |
0.29 |
-0.20 |
5.4 |
78 |
1 |
1 |
1 |
4 |
2 |
1 |
0 |
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4 |
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2.87 |
3.07 |
38.9 |
-1.29 |
-0.27 |
15.3 |
91 |
4 |
2 |
7 |
4 |
0 |
0 |
0 |
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5 |
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1.26 |
1.40 |
39.5 |
-0.85 |
-0.36 |
7.7 |
80 |
2 |
1 |
5 |
4 |
1 |
2 |
0 |
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6 |
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2.71 |
3.87 |
39.8 |
0.00 |
-0.04 |
10.8 |
89 |
3 |
0 |
5 |
6 |
1 |
0 |
0 |
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7 |
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1.00 |
2.10 |
45.6 |
-1.57 |
-0.43 |
12.0 |
83 |
1 |
4 |
6 |
1 |
5 |
1 |
0 |
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8 |
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1.45 |
1.79 |
52.5 |
-0.92 |
-0.45 |
9.8 |
84 |
2 |
3 |
5 |
1 |
3 |
1 |
2 |
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9 |
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1.22 |
1.45 |
54.1 |
-0.26 |
-0.11 |
12.3 |
79 |
3 |
4 |
5 |
6 |
4 |
0 |
0 |
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10 |
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1.40 |
1.61 |
60.3 |
-0.78 |
-0.14 |
15.1 |
79 |
4 |
3 |
4 |
6 |
3 |
2 |
1 |
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11 |
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1.19 |
1.32 |
62.9 |
-0.73 |
-0.27 |
10.0 |
82 |
4 |
1 |
6 |
8 |
1 |
0 |
0 |
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12 |
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1.58 |
2.07 |
70.0 |
-0.30 |
-0.14 |
7.7 |
87 |
3 |
1 |
6 |
6 |
3 |
1 |
1 |
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13 |
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1.31 |
1.49 |
70.5 |
0.00 |
0.20 |
14.3 |
84 |
5 |
5 |
3 |
9 |
5 |
0 |
0 |
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14 |
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2.73 |
2.89 |
72.5 |
-1.76 |
-0.47 |
15.6 |
88 |
7 |
3 |
9 |
4 |
2 |
0 |
0 |
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15 |
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2.28 |
2.45 |
89.7 |
-0.80 |
-0.35 |
11.7 |
85 |
3 |
5 |
11 |
7 |
1 |
2 |
2 |
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16 |
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2.44 |
3.09 |
100.4 |
-1.09 |
-0.46 |
17.5 |
86 |
7 |
12 |
10 |
12 |
0 |
1 |
0 |
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17 |
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2.23 |
2.40 |
100.0 |
-1.28 |
-0.55 |
13.4 |
88 |
5 |
9 |
10 |
3 |
3 |
4 |
0 |
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18 |
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1.07 |
2.10 |
100.4 |
-0.88 |
-0.17 |
5.7 |
80 |
2 |
2 |
10 |
4 |
8 |
1 |
0 |
NAG 1307 A
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19 |
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1.38 |
1.60 |
100.7 |
-0.67 |
-0.16 |
12.9 |
84 |
5 |
2 |
4 |
8 |
2 |
2 |
1 |
NAG 1309 C
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20 |
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1.45 |
1.75 |
102.0 |
-1.06 |
-0.48 |
12.4 |
86 |
7 |
7 |
11 |
2 |
2 |
3 |
2 |
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21 |
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1.42 |
1.61 |
116.1 |
0.20 |
-0.02 |
5.6 |
79 |
5 |
0 |
6 |
13 |
4 |
4 |
1 |
NAG 1304 A
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22 |
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2.14 |
2.13 |
122.5 |
-1.47 |
-0.54 |
12.8 |
89 |
6 |
7 |
15 |
5 |
2 |
4 |
0 |
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23 |
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1.21 |
1.55 |
125.7 |
-0.69 |
-0.18 |
14.6 |
84 |
7 |
6 |
10 |
11 |
4 |
3 |
0 |
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24 |
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1.69 |
3.47 |
132.7 |
-0.58 |
-0.17 |
12.3 |
84 |
7 |
3 |
12 |
13 |
3 |
3 |
0 |
NAG 1304 A
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25 |
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2.16 |
2.15 |
139.6 |
-1.51 |
-0.50 |
16.6 |
87 |
7 |
10 |
14 |
5 |
2 |
5 |
0 |
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26 |
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2.12 |
2.18 |
166.5 |
-1.93 |
-0.51 |
20.1 |
86 |
10 |
11 |
11 |
4 |
2 |
4 |
0 |
NAG 1312 A
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27 |
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1.67 |
3.06 |
175.0 |
-0.54 |
-0.16 |
11.0 |
87 |
8 |
2 |
12 |
15 |
3 |
3 |
0 |
NAG 1304 A NAG 1309 C
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28 |
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1.45 |
2.00 |
30.0 |
-1.59 |
-0.04 |
22.1 |
70 |
3 |
2 |
1 |
2 |
4 |
0 |
0 |
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29 |
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1.44 |
2.00 |
53.8 |
-1.76 |
-0.27 |
20.9 |
79 |
5 |
3 |
5 |
4 |
3 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program