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PDBsum entry 8gcc

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Top Page protein dna_rna ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 8gcc calculated with MOLE 2.0 PDB id
8gcc
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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1 tunnel, coloured by tunnel radius 1 tunnel, coloured by tunnel radius 1 tunnel, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.14 1.16 90.1 -1.90 -0.71 20.6 82 8 5 5 0 2 0 0  DC 14 C DT 15 C DC 16 C DA 17 C DT 18 C DT 19 C
DG 20 C DT 21 C DT 4 D DA 5 D DA 6 D DA 8 D DA 9 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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