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PDBsum entry 8g6h
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 8g6h calculated with MOLE 2.0 PDB id
8g6h
Pores calculated on whole structure Pores calculated excluding ligands
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29 pores, coloured by radius 28 pores, coloured by radius 28 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.17 2.33 29.1 -1.91 -0.54 21.2 84 6 0 1 2 0 0 0  DG 20 I DC 21 I DA 29 I DT 30 I DG -33 J DT -
32 J DC -25 J DT -24 J DT -23 J
2 1.56 1.56 29.4 -1.74 -0.60 18.5 80 4 1 0 0 1 1 0  DC -51 I DA -45 I DA -44 I DT -
43 I DT 31 I DA 47 J DG 48 J
3 2.18 2.33 31.2 -2.51 -0.58 30.1 77 4 0 0 0 0 0 0  DA -45 I DA 29 I DT 30 I DT 31 I DG -35 J DG -
33 J DT -32 J
4 2.02 2.13 32.7 -1.27 -0.46 22.9 81 1 7 2 3 1 0 0  
5 2.56 2.81 35.4 -1.89 -0.42 26.6 78 5 0 0 2 0 1 0  DC -75 I DC -74 I DC -4 I DC -2 I DG -
1 I DC 0 I DT 1 I DT 3 I DG -5 J DG -4 J DC -
2 J DG 0 J DC 1 J
6 3.16 3.33 45.5 -1.48 -0.66 16.2 89 6 0 5 1 1 0 0  DC -32 I DA -31 I DG -30 I DA -25 I DA -
55 J DC 19 J DG 27 J DA 28 J DG 29 J DC 30 J
7 3.15 3.33 46.1 -1.26 -0.63 14.4 97 4 0 5 2 0 0 0  DC -32 I DA -31 I DG -30 I DA -25 I DA 50 I DC -
54 J DA -53 J DG 27 J DA 28 J DG 29 J DC 30 J
8 3.20 3.21 53.7 -2.81 -0.52 33.5 75 7 0 0 0 1 0 0  DA -35 I DC -32 I DA -31 I DG -
30 I DT 38 I DG 40 I DT 41 I DG -45 J DG -
44 J DA -43 J DG -42 J DA -41 J DC -
40 J DG 27 J DA 28 J DG 29 J DC 30 J DT 31 J
9 2.31 2.31 59.4 -1.91 -0.62 19.4 83 5 2 3 1 1 1 0  DC -64 I DG -
55 I DG 9 I DC 10 I DC 19 I DG 20 I DC 21 I DT -
24 J DA -14 J DA -13 J DA -12 J DC -11 J DG -
10 J DC -9 J DA 59 J DC 60 J
10 3.21 3.22 65.1 -2.34 -0.62 28.1 78 6 2 1 0 1 0 0  DA -45 I DA -
35 I DT 31 I DT 38 I DG 40 I DT 41 I DG -45 J DG -
44 J DA -43 J DG -42 J DA -41 J DC -40 J DG -
35 J DC 40 J
11 3.61 3.87 73.4 -2.02 -0.72 24.9 77 6 2 1 0 0 0 0  DA -45 I DA -35 I DC -32 I DA -31 I DG -
30 I DT 31 I DG 40 I DT 41 I DG -45 J DG -
35 J DG 27 J DA 28 J DG 29 J DC 30 J DT 31 J DC
40 J
12 1.15 1.14 75.1 -1.68 -0.57 16.6 86 7 1 4 1 1 0 0  DA -69 I DG -68 I DA -66 I DT -65 I DC -64 I DC -
63 I DG -55 I DC 19 I DG 20 I DC 21 I DT -
24 J DG -7 J DG -
6 J DA 59 J DC 60 J DC 68 J DT 69 J DG 70 J DA 71
J DT 72 J
13 2.98 3.01 77.2 -1.98 -0.59 22.8 86 8 0 5 1 2 0 0  DA -35 I DA -25 I DT 38 I DG 40 I DT 41 I DA -
55 J DG -45 J DG -44 J DA -43 J DG -42 J DA -
41 J DC -40 J DC 19 J DG 29 J DC 30 J DT 31 J
14 3.02 3.05 77.7 -1.85 -0.59 21.4 93 6 0 5 2 1 0 0  DA -35 I DA -
25 I DT 38 I DG 40 I DT 41 I DA 50 I DC -54 J DA -
53 J DG -45 J DG -44 J DA -43 J DG -42 J DA -
41 J DC -40 J DG 29 J DC 30 J DT 31 J
15 1.13 1.13 78.8 -1.86 -0.56 20.0 80 6 1 2 0 2 0 0  DA -69 I DG -68 I DA -66 I DT -65 I DC -64 I DC -
63 I DT 12 I DA -15 J DA -14 J DG -7 J DG -
6 J DA 59 J DC 60 J DC 68 J DT 69 J DG 70 J DA 71
J DT 72 J
16 1.13 1.13 79.7 -2.08 -0.56 21.9 78 8 2 2 0 2 1 0  DC -75 I DA -69 I DG -68 I DA -66 I DT -65 I DC -
64 I DC -63 I DG 9 I DC 10 I DA -14 J DA -
13 J DA -12 J DC -11 J DG -10 J DC -9 J DG -
7 J DG -
6 J DA 59 J DC 60 J DC 68 J DT 69 J DG 70 J DA 71
J DT 72 J
17 1.76 1.76 96.9 -1.75 -0.55 22.3 84 7 6 4 2 1 1 0  DG -55 I DA -54 I DG -
53 I DC 19 I DG 20 I DC 21 I DT -
24 J DG 56 J DG 57 J DC 58 J DA 59 J
18 3.06 3.09 96.9 -1.62 -0.71 19.1 86 7 2 6 1 1 0 0  DA -45 I DA -35 I DA -
25 I DT 31 I DG 40 I DT 41 I DA -55 J DG -
45 J DG -
35 J DC 19 J DG 29 J DC 30 J DT 31 J DC 40 J
19 2.96 2.99 97.5 -1.48 -0.71 17.7 93 5 2 6 2 0 0 0  DA -45 I DA -35 I DA -
25 I DT 31 I DG 40 I DT 41 I DA 50 I DC -54 J DA -
53 J DG -45 J DG -
35 J DG 29 J DC 30 J DT 31 J DC 40 J
20 1.41 1.49 102.9 -1.18 -0.27 20.0 78 9 3 4 5 2 3 0  DC -75 I DC -74 I DA -14 I DA -13 I DC -12 I DG -
11 I DC -2 I DG -1 I DT 3 I DG -5 J DG -
4 J DA 6 J DC 7 J
21 2.31 2.32 117.3 -2.12 -0.35 30.1 82 11 4 5 6 1 0 0  DC -4 I DC -2 I DG -1 I DC 0 I DT 1 I DC -
2 J DG 0 J DC 1 J
22 2.62 2.80 117.0 -1.55 -0.32 24.6 81 12 5 5 6 1 1 0  MLY 79 A DC -75 I DC -74 I DA -33 I DC -32 I DA -
31 I DG -1 I DT 3 I DG -5 J DG -4 J
23 1.16 1.16 126.7 -1.78 -0.48 23.1 82 9 6 2 2 2 1 0  DC -75 I DA -69 I DG -68 I DA -66 I DT -65 I DC -
64 I DC -63 I DG -7 J DG -
6 J DG 57 J DC 58 J DA 59 J DC 68 J DT 69 J DG 70
J DA 71 J DT 72 J
24 1.22 1.28 131.3 -1.50 -0.34 23.6 84 14 4 7 7 2 1 0  DC -75 I DC -74 I DG -1 I DT 3 I DG -5 J DG -4 J
25 2.66 2.89 151.1 -2.29 -0.35 30.6 80 18 4 6 5 1 0 0  DA -45 I DC -4 I DC -2 I DG -
1 I DC 0 I DT 1 I DT 31 I DG -35 J DC -
2 J DG 0 J DC 1 J
26 2.41 2.70 155.9 -1.63 -0.39 20.8 84 17 4 10 7 2 2 0  DC -75 I DC -74 I DG -1 I DT 3 I DA 50 I DC -
54 J DA -53 J DG -5 J DG -4 J
27 2.59 2.73 167.6 -1.62 -0.37 21.8 83 20 4 11 7 3 1 0  DC -75 I DC -74 I DG -1 I DT 3 I DA -55 J DG -
5 J DG -4 J DC 19 J DG 29 J
28 2.66 2.73 181.7 -1.99 -0.36 26.9 80 23 5 6 6 2 1 0  DC -75 I DC -74 I DA -35 I DG -
1 I DT 3 I DT 38 I DG 40 I DT 41 I DG -45 J DG -
44 J DA -43 J DG -42 J DA -41 J DC -40 J DG -
5 J DG -4 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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