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PDBsum entry 8ff6

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 8ff6 calculated with MOLE 2.0 PDB id
8ff6
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.98 2.66 15.9 -1.23 -0.27 22.1 69 2 2 0 3 1 0 0  
2 1.18 2.39 20.9 -1.71 -0.44 26.8 78 3 4 2 2 1 0 0  
3 1.18 2.40 23.2 -2.00 -0.52 28.4 78 3 4 2 2 1 0 0  
4 1.65 1.65 17.4 -1.96 -0.11 26.5 65 2 1 0 1 1 0 0  
5 1.16 1.20 15.2 -0.75 -0.62 8.1 84 1 0 2 0 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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