PDBsum entry 8f4j Go to PDB code:  Tunnel analysis for: 8f4j calculated with MOLE 2.0 PDB id 8f4j Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.32 67.5 -0.88 -0.33 16.9 81 4 8 6 9 4 1 0  OEX 601 A DGD 515 C 2 1.15 1.40 70.5 -0.99 -0.38 15.6 82 4 8 8 7 4 2 0  OEX 601 A DGD 515 C 3 1.20 1.32 75.4 -0.12 -0.01 11.4 75 2 6 4 14 7 2 1  OEX 601 A CLA 609 A LMG 613 A CLA 505 C CLA 506 C DGD 515 C 4 1.16 1.28 78.0 -1.06 -0.31 19.5 83 7 8 6 11 4 0 0  OEX 601 A DGD 516 C DGD 517 C LMG 518 C STE 101 J 5 1.17 1.41 81.0 -1.18 -0.37 18.4 84 7 8 8 9 4 1 0  OEX 601 A DGD 516 C DGD 517 C LMG 518 C STE 101 J 6 1.20 1.35 101.7 0.05 0.07 10.5 75 3 6 6 18 10 3 1  OEX 601 A CLA 609 A BCR 610 A LMG 613 A CLA 505 C CLA 506 C DGD 515 C STE 101 I 7 1.19 1.44 16.4 -0.11 -0.07 7.7 71 2 0 2 2 1 1 0   8 1.16 1.18 15.9 1.46 0.19 2.8 83 1 0 1 5 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.