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PDBsum entry 8f1c

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 8f1c calculated with MOLE 2.0 PDB id
8f1c
Pores calculated on whole structure Pores calculated excluding ligands

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19 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.18 1.20 67.4 0.67 0.33 12.8 71 4 2 0 12 6 2 0  
2 1.18 1.20 67.5 0.72 0.35 12.6 71 4 2 0 12 6 2 0  
3 1.21 1.40 85.2 0.53 0.44 11.3 72 5 3 1 13 7 2 0  
4 1.21 1.40 85.3 0.54 0.45 11.2 72 5 3 1 13 7 2 0  
5 1.24 1.34 181.0 -0.13 0.07 16.6 74 12 7 2 20 8 4 0  POV 603 B
6 1.24 1.34 181.2 -0.11 0.08 16.4 74 12 7 2 20 8 4 0  POV 603 A
7 1.17 1.09 205.1 -1.10 -0.26 15.2 84 12 7 16 16 7 1 0  
8 2.88 3.65 267.1 0.36 0.16 7.5 81 7 5 15 38 11 2 0  POV 603 A POV 603 C
9 2.88 3.65 267.1 0.35 0.15 7.6 81 7 5 15 38 11 2 0  POV 603 B POV 603 D
10 1.47 1.47 26.3 -1.43 -0.18 20.1 76 3 3 2 2 2 1 0  X9T 602 B
11 1.25 1.25 26.4 -1.54 -0.50 7.3 85 1 2 4 2 1 2 0  
12 1.45 1.45 30.3 -1.65 -0.44 14.5 83 2 4 4 3 1 2 0  
13 2.14 2.64 25.8 -0.76 -0.11 7.5 86 2 1 3 4 2 1 0  X9T 602 C
14 1.26 1.25 26.4 -1.54 -0.50 7.3 85 1 2 4 2 1 2 0  
15 1.46 1.87 28.6 -1.00 -0.09 18.2 78 3 3 2 3 2 1 0  X9T 602 C
16 1.45 1.45 30.3 -1.65 -0.44 14.5 83 2 4 4 3 1 2 0  
17 1.46 1.46 28.8 -1.48 -0.45 13.4 83 2 4 4 3 1 2 0  
18 2.14 2.64 25.8 -0.76 -0.11 7.5 86 2 1 3 4 2 1 0  X9T 602 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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