PDBsum entry 8eqc

Tunnel analysis for: 8eqc calculated with

MOLE 2.0

PDB id

8eqc

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

9 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.18

2.61

30.0

-0.36

-0.57

2.5

97

1

0

8

4

1

0

0

2

1.18

2.62

32.6

-0.29

-0.51

2.1

95

0

0

7

4

1

1

0

3

1.12

1.12

22.6

-0.62

-0.49

12.1

75

1

1

1

4

0

1

1

4

1.12

1.12

23.8

-0.44

-0.51

8.6

80

1

0

3

4

0

2

1

5

1.12

1.12

35.1

-0.22

-0.46

6.4

79

2

0

3

4

1

1

1

6

1.17

1.17

16.7

-0.40

-0.36

12.4

74

1

2

2

3

1

1

0

7

1.17

1.17

17.4

-0.50

-0.45

11.9

81

1

2

1

3

0

1

0

8

1.16

1.17

24.2

-0.32

-0.47

6.4

79

1

1

4

3

2

1

0

9

1.13

1.13

24.8

-0.27

-0.51

6.1

85

1

1

4

3

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.