PDBsum entry 8ed9 Go to PDB code:  Pore analysis for: 8ed9 calculated with MOLE 2.0 PDB id 8ed9 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.30 4.03 36.4 -2.48 -0.57 25.2 82 3 3 4 3 0 1 0   2 2.36 2.50 66.8 -2.22 -0.48 27.1 79 8 6 3 2 4 0 0   3 2.30 2.67 73.7 -2.95 -0.72 31.5 82 10 7 6 2 1 0 0   4 1.18 1.45 75.7 -0.94 -0.34 14.1 75 3 3 3 6 1 2 0   5 2.13 2.30 80.6 -2.43 -0.50 23.5 82 7 6 8 4 2 2 0   6 2.30 4.05 85.4 -2.61 -0.59 26.7 82 9 7 9 6 0 2 0   7 3.29 4.03 92.5 -0.75 0.24 18.1 84 6 5 1 9 3 1 1  3PH 1401 C PIO 1403 D 8 2.31 2.67 93.9 -2.65 -0.64 27.4 82 10 8 7 2 1 1 0   9 1.20 1.58 98.6 -0.13 -0.03 8.8 78 5 2 4 7 6 2 0  UNK 9 F UNK 10 F UNK 11 F 10 2.13 4.13 102.4 -2.57 -0.52 25.2 81 10 7 9 6 2 3 0   11 1.12 1.30 104.2 0.08 -0.05 5.9 70 3 4 5 14 13 6 4  9Z9 1402 B NA 1404 B 12 2.17 4.14 110.1 -2.34 -0.46 24.0 81 9 7 9 5 2 3 0   13 2.32 4.03 138.0 -2.21 -0.54 23.6 81 16 11 15 3 4 4 0   14 2.11 2.25 137.9 -2.47 -0.51 25.8 81 13 10 11 5 3 3 0   15 0.85 1.74 145.1 -0.44 -0.18 12.3 77 5 5 3 8 4 1 0  UNK 3 F UNK 4 F UNK 5 F UNK 6 F UNK 7 F UNK 9 F UNK 10 F UNK 11 F 16 1.24 4.25 149.7 0.28 0.48 8.8 81 6 1 10 26 8 0 2  3PH 1401 A PIO 1403 B NA 1404 B 17 2.22 2.27 165.9 -2.29 -0.42 22.8 80 17 11 13 3 8 3 0   18 2.42 3.50 175.2 -2.43 -0.49 26.8 81 19 14 15 6 5 3 0   19 2.30 3.18 172.7 -1.92 -0.26 25.7 82 15 11 9 7 3 2 0   20 0.76 1.59 186.9 0.31 0.16 10.7 77 5 5 6 13 7 1 0  UNK 3 F UNK 4 F UNK 5 F UNK 6 F UNK 7 F 21 1.29 1.38 199.9 -1.72 -0.43 15.8 82 13 8 13 7 4 3 0  UNK 9 H UNK 10 H UNK 11 H 22 2.06 4.27 204.6 -2.37 -0.46 28.0 79 22 16 10 8 4 3 0   23 2.18 2.38 239.4 -1.59 -0.22 21.6 83 17 14 13 14 6 3 1  3PH 1401 C 24 2.61 2.59 238.0 -2.07 -0.43 25.3 83 20 17 16 11 3 3 0   25 1.77 1.76 254.8 -2.87 -0.65 29.9 81 25 16 18 4 3 1 0  PIO 1403 B 26 2.58 3.23 253.1 -2.21 -0.32 28.1 83 21 17 11 9 4 1 0  PIO 1403 D 27 1.44 1.69 261.4 -1.06 -0.01 19.6 79 18 12 15 31 13 1 1  PIO 1403 A PIO 1403 B 3PH 1401 D 28 1.26 1.26 300.3 -0.96 -0.01 16.4 80 14 10 14 30 12 7 1  PIO 1403 A 3PH 1401 D 29 1.53 1.64 306.1 -1.20 -0.04 19.2 79 25 14 19 27 15 4 1  PIO 1403 A PIO 1403 B 3PH 1401 D 30 1.65 2.35 383.3 -1.11 -0.12 18.7 80 19 16 18 31 14 4 1  PIO 1403 A 3PH 1401 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.