spacer
spacer

PDBsum entry 8dfc

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 8dfc calculated with MOLE 2.0 PDB id
8dfc
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.18 1.18 29.8 -1.89 -0.62 19.0 93 2 3 3 3 0 0 0  ADP 302 F
2 2.66 2.82 41.5 -2.13 -0.65 23.2 87 5 6 5 3 1 0 0  
3 1.36 1.84 42.9 -1.90 -0.51 17.0 94 3 3 6 2 0 0 0  ADP 301 E
4 1.61 3.93 56.7 -2.56 -0.79 28.4 86 8 7 8 2 0 0 0  
5 1.12 1.43 65.7 -1.63 -0.54 21.3 89 7 6 2 9 1 0 0  ADP 301 E ADP 302 F
6 1.18 2.08 75.7 -2.68 -0.67 36.2 81 8 13 5 3 3 0 0  
7 1.40 1.87 83.3 -1.74 -0.52 21.6 82 8 8 3 6 2 2 0  ADP 301 E ALF 302 E
8 1.54 1.76 87.4 -1.99 -0.52 21.6 83 9 6 7 5 2 2 0  ADP 301 E ALF 302 E
9 1.20 1.23 89.3 -1.83 -0.59 22.1 82 9 10 3 6 2 2 0  MG 301 F ADP 302 F ALF 303 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer