PDBsum entry 8cod Go to PDB code:  Tunnel analysis for: 8cod calculated with MOLE 2.0 PDB id 8cod Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 3.20 28.0 -1.58 -0.11 21.6 76 6 3 2 3 2 2 0  NA 603 B 2 1.64 1.67 38.7 -0.94 -0.37 19.6 89 4 6 3 7 0 1 0  NA 603 B 3 1.45 1.45 15.2 -1.14 0.05 14.2 66 1 1 1 1 1 0 0   4 1.46 1.46 15.5 -1.18 -0.01 15.2 66 1 1 1 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.