spacer
spacer

PDBsum entry 8c4c

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 8c4c calculated with MOLE 2.0 PDB id
8c4c
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.71 1.87 44.0 -1.66 -0.42 15.9 86 4 3 5 5 1 1 0  HIC 73 B
2 1.43 2.38 47.0 -0.92 -0.39 18.5 86 4 4 4 8 0 0 0  
3 1.64 1.73 50.1 -1.05 -0.55 13.3 92 5 3 5 4 0 0 0  
4 1.70 1.70 55.6 -2.13 -0.33 30.5 82 11 6 3 3 2 1 0  HIC 73 E
5 1.50 1.51 65.1 -1.34 -0.32 18.6 89 8 4 4 8 1 1 0  HIC 73 B
6 1.71 1.71 67.4 -1.72 -0.37 21.3 80 9 6 5 6 4 2 0  HIC 73 C
7 1.20 1.47 75.9 -0.91 -0.25 17.2 86 9 5 7 9 3 1 0  HIC 73 G
8 1.46 3.00 76.8 -1.82 -0.41 22.4 82 8 6 6 7 2 2 0  HIC 73 C
9 1.46 2.97 77.5 -1.67 -0.25 25.3 84 9 8 4 7 2 1 0  HIC 73 D HIC 73 E
10 2.04 2.20 80.7 -1.59 -0.45 16.9 85 7 6 10 8 2 2 0  HIC 73 B
11 1.45 1.47 80.6 -1.03 -0.40 16.9 87 8 6 8 10 1 1 0  HIC 73 E HIC 73 F
12 1.50 2.98 84.3 -1.47 -0.17 22.3 79 12 7 3 8 4 2 0  HIC 73 C
13 1.68 1.89 90.7 -1.72 -0.61 21.7 89 8 7 5 7 0 1 0  HIC 73 G
14 1.68 2.99 93.3 -1.66 -0.34 22.7 79 15 6 2 7 2 2 0  
15 1.52 1.54 98.0 -1.47 -0.45 23.2 84 9 9 8 12 2 1 0  HIC 73 F
16 1.54 1.57 97.5 -1.59 -0.47 20.6 84 12 8 6 8 2 2 0  HIC 73 F
17 1.57 2.64 102.6 -1.69 -0.48 22.4 86 10 10 11 11 1 1 0  HIC 73 B
18 1.47 3.01 103.2 -1.92 -0.28 27.5 80 17 9 3 6 3 3 0  HIC 73 D
19 1.46 1.55 105.8 -1.69 -0.55 19.0 89 11 9 12 7 1 1 0  HIC 73 B
20 1.89 2.50 105.9 -0.96 -0.38 17.4 89 9 9 9 15 0 0 0  HIC 73 E HIC 73 F HIC 73 G
21 1.70 1.73 108.8 -1.33 -0.38 20.0 86 9 10 9 12 2 1 0  HIC 73 C HIC 73 D HIC 73 E
22 1.55 1.58 111.0 -1.54 -0.42 20.6 86 14 5 7 8 4 2 0  
23 1.49 2.98 113.2 -1.47 -0.31 20.8 83 11 10 7 12 2 2 0  HIC 73 B HIC 73 C
24 1.84 2.33 118.9 -1.16 -0.41 17.9 88 7 6 9 13 1 1 0  HIC 73 G
25 1.61 2.11 124.4 -1.38 -0.44 23.1 87 12 12 8 17 0 0 0  HIC 73 F HIC 73 G
26 1.45 2.28 126.2 -1.29 -0.59 14.3 87 5 9 14 10 2 3 0  
27 1.45 2.37 135.1 -1.51 -0.38 23.4 84 14 14 8 15 1 1 0  HIC 73 B HIC 73 C
28 1.55 1.58 153.2 -1.42 -0.38 20.8 85 13 9 11 15 4 2 0  HIC 73 G
29 1.35 3.17 185.9 -1.74 -0.40 24.3 79 11 15 3 7 7 3 0  HIC 73 H
30 1.69 1.72 194.3 -1.44 -0.40 21.6 86 24 18 11 15 2 1 0  HIC 73 B HIC 73 C HIC 73 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer