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PDBsum entry 8c1c

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 8c1c calculated with MOLE 2.0 PDB id
8c1c
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.47 1.67 22.4 0.43 -0.32 1.4 96 0 0 5 5 0 0 0  
2 1.46 1.67 27.1 0.41 -0.29 1.5 93 0 0 4 6 0 0 0  
3 1.13 1.53 19.7 -1.88 -0.52 23.8 77 4 2 2 1 1 2 0  
4 1.40 1.76 20.1 -2.22 -0.59 24.4 76 4 2 2 0 1 2 1  
5 1.16 2.36 18.6 -1.10 -0.23 13.2 69 1 1 1 2 2 1 0  
6 1.08 1.27 16.4 1.25 -0.05 1.4 96 0 0 1 6 0 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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