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PDBsum entry 7wpf

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protein ligands Protein-protein interface(s) links
Viral protein PDB id
7wpf

 

 

 

 

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Contents
Protein chains
1024 a.a.
225 a.a.
213 a.a.
120 a.a.
Ligands
NAG-NAG ×2
NAG ×35
PDB id:
7wpf
Name: Viral protein
Title: Sars-cov-2 omicron variant s trimer complexed with three jmb2002 fab
Structure: Spike glycoprotein. Chain: a, b, c. Synonym: s glycoprotein,e2,peplomer protein. Engineered: yes. Mutation: yes. Jmb2002 fab heavy chain. Chain: r, u, x. Engineered: yes. Jmb2002 fab light chain.
Source: Severe acute respiratory syndrome coronavirus 2. Organism_taxid: 2697049. Variant: omicron. Gene: s, 2. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hek293. Mus musculus.
Authors: W.Yin,Y.Xu,P.Xu,X.Cao,C.Wu,C.Gu,X.He,X.Wang,S.Huang,Q.Yuan,K.Wu,W.Hu, Z.Huang,J.Liu,Z.Wang,F.Jia,K.Xia,P.Liu,X.Wang,B.Song,J.Zheng, H.Jiang,X.Cheng,Y.Jiang,S.J.Deng,H.E.Xu
Key ref: W.Yin et al. (2022). Structures of the omicron spike trimer with ace2 and anti-Omicron antibody.. Science, 375, 1048. PubMed id: 35133176
Date:
23-Jan-22     Release date:   16-Mar-22    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
P0DTC2  (SPIKE_SARS2) -  Spike glycoprotein from Severe acute respiratory syndrome coronavirus 2
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1273 a.a.
1024 a.a.*
Protein chains
No UniProt id for this chain
Struc: 225 a.a.
Protein chains
No UniProt id for this chain
Struc: 213 a.a.
Protein chains
No UniProt id for this chain
Struc: 120 a.a.
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 29 residue positions (black crosses)

 

 

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