spacer
spacer

PDBsum entry 7v0c

Go to PDB code: 
Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 7v0c calculated with MOLE 2.0 PDB id
7v0c
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.95 3.95 39.5 -2.02 -0.80 23.9 69 2 3 1 1 0 2 0  DT 2 E DC 3 E DT 4 E DG 5 E DG 11 F DC 14 F DA 1
I DT 2 I DC 3 I DT 4 I DG 5 I DT 6 I DT 12 J DC
14 J DA 15 J
2 1.49 1.67 66.9 -1.70 -0.64 19.6 83 7 3 3 1 0 1 0  DT 6 I DA 7 I DC 8 I DA 9 I DT 10 I DT 12 I DT 2
J DC 3 J DT 4 J DT 6 J DA 7 J DG 16 J DA 17 J DT
18 J
3 1.71 1.75 79.2 -1.59 -0.49 18.9 76 8 4 3 2 2 1 0  DT 4 I DG 5 I DT 6 I DA 9 I DT 10 I DG 11 I DT 12
I DT 2 J DC 3 J DT 10 J DG 11 J DT 12 J DA 13 J
DC 14 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer