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PDBsum entry 7v0c

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 7v0c calculated with MOLE 2.0 PDB id
7v0c
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.37 1.37 34.4 -1.63 -0.34 25.9 85 7 1 1 1 0 0 0  DA 15 E DG 16 E DA 17 E DA 1 F DG 5 F DT 6 F
2 1.36 1.36 57.3 -1.59 -0.55 18.2 84 4 3 4 1 2 0 0  DG 5 E DA 13 E DC 14 E DG 5 F DT 6 F DA 7 F DC 8
F DA 9 F DT 10 F DG 11 F DC 14 J DA 15 J
3 1.37 1.37 62.8 -1.37 -0.45 15.2 82 4 3 5 2 2 0 0  DA 7 E DC 8 E DA 13 E DC 14 E DG 5 F DT 6 F DA 7
F DC 8 F DA 9 F DT 10 F
4 1.37 1.37 100.6 -1.72 -0.49 18.0 81 11 3 7 3 4 1 0  DA 13 E DC 14 E DG 5 F DT 6 F DA 7 F DC 8 F DA 9
F DT 10 F DA 9 I DT 10 I DG 11 I DT 12 I DT 2 J
DC 3 J DT 10 J DG 11 J DT 12 J DA 13 J DC 14 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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