 |
PDBsum entry 7qkd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 7qkd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
7qkd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
2 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.16 |
1.16 |
27.9 |
0.24 |
-0.17 |
9.8 |
84 |
|
1 |
2 |
0 |
8 |
1 |
0 |
0 |
|
PEG 303 A ALD 301 B
|
 |
|
2 |
 |
1.16 |
1.15 |
35.9 |
-0.72 |
-0.27 |
15.0 |
78 |
3 |
2 |
1 |
6 |
3 |
0 |
0 |
PEG 303 A ALD 301 B
|
|
3 |
 |
1.19 |
1.18 |
54.0 |
-0.99 |
-0.35 |
15.3 |
83 |
4 |
5 |
6 |
7 |
6 |
0 |
0 |
PEG 303 A ALD 301 B
|
 |
4 |
 |
1.24 |
1.24 |
71.7 |
-1.47 |
-0.58 |
17.5 |
85 |
6 |
9 |
8 |
8 |
3 |
1 |
0 |
PEG 303 A ALD 301 B
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program