spacer
spacer

PDBsum entry 7gjs

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 7gjs calculated with MOLE 2.0 PDB id
7gjs
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
1 pore, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.35 3.42 29.7 0.11 -0.41 2.4 80 0 0 1 4 2 0 0  
2 1.49 2.61 99.8 -1.28 -0.54 8.5 88 2 3 8 2 4 0 0  
3 1.19 2.33 34.8 -1.45 -0.37 14.4 85 2 2 8 2 2 0 1  DMS 402 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer