PDBsum entry 7gjs Go to PDB code:  Tunnel analysis for: 7gjs calculated with MOLE 2.0 PDB id 7gjs Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.61 31.6 -1.23 -0.49 21.9 85 4 4 1 5 0 0 0  DMS 401 B 2 1.38 1.62 33.2 -1.29 -0.48 22.2 85 4 4 0 5 0 0 0  DMS 401 B 3 1.38 1.62 34.5 -1.15 -0.49 19.2 90 4 1 0 5 0 0 0  DMS 401 B 4 1.37 1.63 39.6 -1.11 -0.51 18.7 82 4 3 1 5 0 0 0  DMS 401 B DMS 403 B 5 1.14 2.26 22.4 -2.29 -0.53 21.8 87 2 2 5 1 1 0 0  DMS 402 B 6 1.51 1.68 24.9 0.63 0.11 1.9 87 0 0 6 3 1 0 1   7 1.21 2.36 26.5 -1.97 -0.54 17.9 87 2 2 6 1 2 0 0  DMS 402 B 8 1.51 1.67 27.9 0.36 0.03 2.5 87 1 0 6 3 1 0 1   9 1.15 1.22 21.1 -1.08 -0.10 22.4 79 2 1 1 3 1 2 0  DMS 402 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.