 |
PDBsum entry 7dkc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 7dkc calculated with  MOLE 2.0
|
PDB id
|
|
|
|
7dkc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 pores,
coloured by radius |
|
8 pores,
coloured by radius
|
8 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.56 |
1.56 |
43.2 |
-1.96 |
-0.50 |
23.9 |
86 |
|
4 |
5 |
5 |
4 |
1 |
0 |
0 |
|
GOL 804 B
|
 |
|
2 |
 |
1.18 |
1.44 |
50.0 |
-2.14 |
-0.47 |
26.2 |
84 |
5 |
5 |
4 |
2 |
2 |
0 |
0 |
|
|
3 |
 |
1.36 |
2.62 |
50.9 |
-2.00 |
-0.47 |
22.6 |
81 |
7 |
3 |
3 |
3 |
2 |
0 |
0 |
GOL 806 A
|
|
4 |
 |
1.28 |
2.61 |
59.1 |
-1.87 |
-0.44 |
23.1 |
85 |
6 |
4 |
5 |
4 |
2 |
0 |
0 |
|
|
5 |
 |
1.33 |
2.13 |
59.6 |
-1.93 |
-0.34 |
22.8 |
83 |
5 |
4 |
5 |
4 |
3 |
0 |
0 |
GOL 804 B
|
|
6 |
 |
1.19 |
1.28 |
61.3 |
-1.80 |
-0.52 |
19.6 |
84 |
8 |
3 |
7 |
4 |
2 |
1 |
1 |
GOL 805 A
|
|
7 |
 |
1.15 |
1.21 |
81.4 |
-1.84 |
-0.51 |
20.3 |
85 |
9 |
5 |
9 |
7 |
2 |
1 |
1 |
GOL 805 A
|
 |
8 |
 |
1.27 |
2.63 |
107.5 |
-2.14 |
-0.57 |
24.1 |
84 |
9 |
6 |
7 |
4 |
2 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program