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PDBsum entry 6xnx

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 6xnx calculated with MOLE 2.0 PDB id
6xnx
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.74 1.94 52.1 -1.90 -0.64 20.0 88 5 2 6 2 0 1 1  DA 20 L DG 21 L DA 27 y DC 28 y
2 1.17 1.39 53.4 -2.15 -0.47 23.1 81 6 2 3 0 0 1 1  DA 20 M DC 36 x DT 37 x DA 38 x
3 1.26 1.53 120.2 -0.70 -0.27 9.8 80 6 3 9 4 6 2 1  DG 24 L DT 25 L DA 26 L DC 29 y DA 30 y
4 1.10 1.68 173.4 -1.26 -0.35 15.2 78 13 7 11 4 7 4 2  DA 20 M DG 21 M DT 22 M DG 24 M DT 25 M DA 26 M
DC 36 x DT 37 x DA 38 x DC 39 x
5 1.10 1.69 181.2 -1.77 -0.44 21.2 83 19 7 10 6 1 4 2  DA 18 M DA 20 M DG 21 M DT 22 M DG 24 M DT 25 M D
A 26 M DC 36 x DT 37 x DA 38 x DC 39 x DA 41 x DC
42 x DT 43 x DG 44 x DC 47 x
6 1.35 1.80 198.0 -1.68 -0.42 21.4 84 19 12 11 9 1 4 2  DG 24 L DT 25 L DA 26 L DA 20 M DG 21 M DT 22 M
DG 24 M DT 25 M DA 26 M DC 36 x DT 37 x DA 38 x
DC 39 x DG 48 x DA 24 y DC 29 y DA 30 y DC 31 y
DT 32 y DG 33 y DC 36 y DG 37 y
7 1.30 1.68 207.2 -1.48 -0.41 19.3 83 20 9 10 7 1 4 2  DA 9 I DG 10 I DA 20 M DG 21 M DT 22 M DG 24 M DT
25 M DA 26 M DC 36 x DT 37 x DA 38 x DC 39 x DT
53 x DA 54 x DG 55 x DC 63 x DT 64 x DG 65 x
8 1.27 2.29 226.4 -1.07 -0.33 16.1 82 16 11 12 12 7 7 1  DG 10 J DG 11 J DT 25 M DA 26 M DC 36 x DT 37 x
DT 53 x DA 54 x DG 55 x DG 41 y DT 42 y DA 43 y
DG 44 y DC 45 y

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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