PDBsum entry 6xnx

Tunnel analysis for: 6xnx calculated with

MOLE 2.0

PDB id

6xnx

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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9 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.53

2.35

49.3

-1.43

-0.51

22.5

80

5

3

1

3

1

0

0

DA 18 L DC 19 L DA 20 L DT 45 x DC 47 x DG 48 x
DT 53 x DG 33 y DT 34 y DG 37 y DG 41 y

2

1.53

2.35

49.3

-1.43

-0.51

22.5

80

5

3

1

3

1

0

0

DA 18 L DC 19 L DA 20 L DT 45 x DC 47 x DG 48 x
DT 53 x DG 33 y DT 34 y DG 37 y DG 41 y

3

1.51

2.34

52.4

-1.40

-0.52

22.6

81

7

4

2

3

1

0

0

DA 18 L DC 19 L DA 20 L DT 45 x DG 48 x DG 52 x
DG 33 y DT 34 y DC 36 y DG 37 y DG 41 y DT 42 y

4

1.51

2.34

52.4

-1.40

-0.52

22.6

81

7

4

2

3

1

0

0

DA 18 L DC 19 L DA 20 L DT 45 x DG 48 x DG 52 x
DG 33 y DT 34 y DC 36 y DG 37 y DG 41 y DT 42 y

5

1.28

1.28

15.6

-1.21

0.04

29.4

81

4

3

1

2

1

0

0

6

1.75

2.01

16.1

-0.95

-0.12

27.0

81

2

3

1

3

1

0

0

7

1.28

1.28

17.3

-0.92

0.02

30.8

84

3

2

0

4

0

0

0

8

1.24

1.40

17.9

0.12

-0.15

7.8

83

1

1

2

3

2

0

0

9

1.30

1.35

17.2

-0.59

-0.56

9.1

84

1

3

1

1

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.