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PDBsum entry 6wpf

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 6wpf calculated with MOLE 2.0 PDB id
6wpf
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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1 tunnel, coloured by tunnel radius 1 tunnel, coloured by tunnel radius 1 tunnel, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.06 1.07 85.7 -0.82 -0.31 13.0 77 4 2 0 4 3 0 0  DT 813 P DC 814 P DG 815 P DG 816 P G47 817 P DC
818 P SO4 902 P DA 705 T DC 706 T DG 707 T DG 708
T DC 709 T DG 710 T DC 711 T DC 713 T DG 714 T DA
715 T SO4 801 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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