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PDBsum entry 6vmf
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Tunnel analysis for: 6vmf calculated with  MOLE 2.0
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PDB id
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6vmf
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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13 tunnels,
coloured by tunnel radius |
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11 tunnels,
coloured by
tunnel radius
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11 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.26 |
2.49 |
25.0 |
-1.26 |
0.04 |
18.8 |
62 |
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3 |
1 |
0 |
2 |
3 |
1 |
0 |
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2 |
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1.15 |
2.30 |
23.9 |
1.10 |
0.38 |
7.1 |
74 |
1 |
1 |
1 |
7 |
2 |
0 |
0 |
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3 |
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1.15 |
2.33 |
25.9 |
1.02 |
0.52 |
9.0 |
74 |
1 |
1 |
0 |
7 |
2 |
0 |
0 |
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4 |
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1.31 |
1.31 |
18.7 |
0.77 |
0.05 |
6.5 |
82 |
2 |
0 |
2 |
6 |
0 |
0 |
0 |
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5 |
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1.26 |
2.31 |
19.7 |
-0.43 |
0.19 |
19.0 |
76 |
4 |
2 |
2 |
3 |
3 |
0 |
0 |
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6 |
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1.29 |
1.29 |
21.3 |
0.05 |
-0.28 |
6.7 |
90 |
2 |
0 |
3 |
3 |
0 |
0 |
0 |
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7 |
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1.50 |
1.62 |
18.6 |
0.05 |
-0.15 |
8.4 |
91 |
2 |
0 |
3 |
4 |
0 |
0 |
0 |
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8 |
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1.21 |
2.16 |
19.3 |
-0.05 |
0.29 |
5.1 |
80 |
1 |
0 |
3 |
3 |
2 |
0 |
0 |
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9 |
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1.61 |
1.72 |
17.4 |
-1.70 |
-0.58 |
15.6 |
82 |
2 |
1 |
4 |
1 |
1 |
1 |
0 |
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10 |
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1.09 |
1.74 |
23.5 |
-1.22 |
-0.09 |
13.2 |
77 |
2 |
2 |
1 |
3 |
2 |
1 |
0 |
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11 |
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1.69 |
2.29 |
17.1 |
-1.72 |
-0.61 |
24.4 |
79 |
1 |
2 |
2 |
2 |
1 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program