PDBsum entry 6s1f

Pore analysis for: 6s1f calculated with

MOLE 2.0

PDB id

6s1f

Pores calculated on whole structure

Pores calculated excluding ligands

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10 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.21

2.08

38.4

-2.16

-0.49

24.4

88

5

1

2

2

0

3

0

2

1.38

2.36

39.3

-1.75

-0.36

21.8

85

5

0

2

5

1

3

0

3

2.05

2.05

43.6

-0.40

-0.19

11.4

79

3

2

2

5

2

1

0

4

2.67

2.71

48.9

-2.45

-0.48

23.8

79

9

7

5

1

4

1

0

5

1.50

1.50

50.5

-1.99

-0.47

20.4

80

5

5

4

2

3

3

0

6

1.57

1.73

51.0

-1.87

-0.43

18.8

81

8

5

4

4

3

3

0

7

1.59

1.76

51.4

-2.34

-0.51

24.3

76

10

5

3

2

3

4

0

8

1.64

1.86

53.9

-1.68

-0.34

17.3

76

7

5

4

4

3

4

0

9

1.68

1.84

61.6

-2.04

-0.40

22.0

75

10

6

3

4

3

5

0

10

2.07

2.08

65.1

-0.32

-0.17

10.1

77

3

2

2

5

2

2

0

11

2.61

4.00

109.8

-2.08

-0.36

21.3

81

12

9

12

6

5

2

0

KRE 400 A

12

1.33

1.38

138.0

-1.47

-0.05

23.3

76

11

4

3

9

4

2

0

KRE 400 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.