 |
PDBsum entry 6pf5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 6pf5 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
6pf5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
2 pores,
coloured by radius |
|
4 pores,
coloured by radius
|
4 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.18 |
2.40 |
48.8 |
-2.09 |
-0.62 |
26.1 |
83 |
|
3 |
5 |
2 |
2 |
1 |
2 |
0 |
|
|
 |
|
2 |
 |
1.78 |
2.77 |
57.4 |
-0.58 |
-0.12 |
16.0 |
76 |
4 |
5 |
2 |
5 |
4 |
2 |
0 |
UMP 600 A OED 601 A
|
|
3 |
 |
2.46 |
2.46 |
52.3 |
-0.85 |
-0.26 |
16.8 |
77 |
6 |
3 |
2 |
6 |
0 |
2 |
0 |
|
 |
4 |
 |
2.23 |
2.38 |
55.1 |
-0.30 |
0.01 |
14.0 |
77 |
5 |
6 |
3 |
5 |
4 |
1 |
1 |
UMP 600 C OED 601 C
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program