PDBsum entry 6pd4

Tunnel analysis for: 6pd4 calculated with

MOLE 2.0

PDB id

6pd4

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.33

2.05

20.1

-1.80

-0.34

21.9

74

2

2

1

2

3

1

0

SO4 715 B

2

1.48

1.77

16.8

-0.52

-0.08

3.2

77

0

1

3

1

2

1

1

3

1.48

1.76

23.6

-0.85

0.13

9.2

83

2

1

4

2

2

1

1

4

1.37

1.41

22.2

-0.25

-0.20

15.3

84

1

2

1

4

2

0

0

5

1.50

1.68

15.3

-0.38

-0.07

2.5

76

0

0

3

1

2

1

1

6

1.36

3.00

21.1

0.30

-0.04

12.9

84

1

2

1

4

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.